Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019414

Physical Location & Seq

Genomic Coordinates Reverse (-)

89450991 .. 89452180

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGTTCGCAGTCTCGCTGTCGAGCCTGGGAACCCTCATATATAGTCTTTATAGGGATGGCTTCGTTCGACAGTTTGATCTGCGAAGCAGTTCTTCTAGAGAACTAGTGCATTGCTCCCGGCTGTCAAAGGGAAAACAAAACCCGCGGCAAATGGCGTTGAGTGATATAGTAATCGACCCAAGGAATCCATATTATTTTTGCATAGGAGGTACCGATGCATATGCACGTGTCTATGACATCCGAAAAAATCAGCTCCAGGGAGATGAGCCAGTGGACATATTTTGCCCAGACCACCTGGTTGAGACGAGCAGGAGTTGGGTCCCTGGGTTGGCTTACTCCAAGTCAGGTGAACTAGCTGTGAAATACTATAATGATCTCATTTATATGTTCAACAAGAATATGGAAGACATTGGCAAGCCACAAGTTTTTCTTGGACACAGAAATAGAGACATTATAACAGGAGTGAGCTTCCTTGGCCCAAATGATGATTATGTCATGAGTGGGAGTATCGAGTATGTGTGGCCATACAATGTTTTGCCTGCAGATTCGAACTTGGATGATGTGATCAAATGGTTACCATCTACCAATGGCATTTATTCGGCTGCTTCTGCAATTGGGAGTCTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

210

Amino Acids

23.59

Weight (kDa)

5.59

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019414)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0008271 RchiOBHm_Chr5g0008341
rosa_laevigata	RLG00000031557 RLG00000031562
rosa_roxburghii	Rroxscaffold_1G00066830 Rroxscaffold_1G00067530 Rroxscaffold_1G00068190
rosa_samantha	Rh5BG059700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	212
AccII	CGCG	1 cut(s)	148
AciI	CCGC	2 cut(s)	146, 148
AcoI	YGGCCR	1 cut(s)	524
AcvI	CACGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	331
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	394
AhlI	ACTAGT	1 cut(s)	106
AjnI	CCWGG	4 cut(s)	27, 258, 297, 325
AluBI	AGCT	3 cut(s)	256, 359, 471
AluI	AGCT	3 cut(s)	256, 359, 471
Alw26I	GTCTC	3 cut(s)	19, 299, 444
AoxI	GGCC	2 cut(s)	478, 524
ApeKI	GCWGC	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	91
Asp718I	GGTACC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	322, 479
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	362
AsuII	TTCGAA	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	212
BbrPI	CACGTG	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	2 cut(s)	53, 589
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	4 cut(s)	29, 260, 299, 327
BclI	TGATCA	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	19, 299, 444
BcuI	ACTAGT	1 cut(s)	106
BfaI	CTAG	3 cut(s)	99, 107, 356
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	2 cut(s)	149, 606
BlsI	GCNGC	2 cut(s)	150, 607
Bme1390I	CCNGG	5 cut(s)	29, 121, 260, 299, 327
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	322, 479
BmiI	GGNNCC	4 cut(s)	34, 214, 323, 324
BmrFI	CCNGG	5 cut(s)	29, 121, 260, 299, 327
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	121
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	7 cut(s)	28, 146, 182, 259, 325, 326, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	4 cut(s)	29, 260, 299, 327
BseDI	CCNNGG	7 cut(s)	28, 146, 182, 259, 325, 326, 475
BseGI	GGATG	3 cut(s)	64, 240, 565
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	592
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	480, 526
BshNI	GGYRCC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	3 cut(s)	19, 299, 444
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	480, 526
Bsp119I	TTCGAA	1 cut(s)	551
Bsp143I	GATC	3 cut(s)	79, 376, 567
BspACI	CCGC	2 cut(s)	146, 148
BspANI	GGCC	2 cut(s)	480, 526
BspFNI	CGCG	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	34, 214, 323, 324
BspMAI	CTGCAG	1 cut(s)	547
BspT104I	TTCGAA	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	7 cut(s)	28, 146, 182, 259, 325, 326, 475
BssMI	GATC	3 cut(s)	79, 376, 567
BssT1I	CCWWGG	2 cut(s)	182, 475
Bst2UI	CCWGG	4 cut(s)	29, 260, 299, 327
Bst4CI	ACNGT	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	419, 543
BstDSI	CCRYGG	1 cut(s)	146
BstEII	GGTNACC	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	64, 240, 565
BstFNI	CGCG	1 cut(s)	148
BstKTI	GATC	3 cut(s)	82, 379, 570
BstMAI	GTCTC	3 cut(s)	19, 299, 444
BstMBI	GATC	3 cut(s)	79, 376, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 611
BstNI	CCWGG	4 cut(s)	29, 260, 299, 327
BstPI	GGTNACC	1 cut(s)	576
BstSCI	CCNGG	5 cut(s)	27, 119, 258, 297, 325
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	480, 526
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	64, 240, 565
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	419, 543
CciI	TCATGA	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	322, 479
Cfr42I	CCGCGG	1 cut(s)	149
CsiI	ACCWGGT	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	1 cut(s)	499
CviQI	GTAC	1 cut(s)	213
DpnI	GATC	3 cut(s)	81, 378, 569
DpnII	GATC	3 cut(s)	79, 376, 567
EaeI	YGGCCR	1 cut(s)	524
Eco130I	CCWWGG	2 cut(s)	182, 475
Eco47I	GGWCC	1 cut(s)	322
Eco72I	CACGTG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	576
EcoRII	CCWGG	4 cut(s)	27, 258, 297, 325
EcoT14I	CCWWGG	2 cut(s)	182, 475
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	182, 475
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	1 cut(s)	502
FalI	AAGNNNNNCTT	4 cut(s)	79, 111, 417, 449
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	1 cut(s)	498
FauI	CCCGC	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	149, 606
FokI	GGATG	3 cut(s)	71, 227, 572
Fsp4HI	GCNGC	2 cut(s)	149, 606
FspBI	CTAG	3 cut(s)	99, 107, 356
GluI	GCNGC	2 cut(s)	149, 606
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	480, 526
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	1 cut(s)	502
HinfI	GANTC	3 cut(s)	187, 548, 622
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	277, 353
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	99, 499
Hpy8I	GTNNAC	2 cut(s)	277, 353
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	6 cut(s)	112, 204, 221, 227, 545, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 611
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	502
KflI	GGGWCCC	1 cut(s)	322
KpnI	GGTACC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	567
KspI	CCGCGG	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	79, 376, 567
LmnI	GCTCC	2 cut(s)	122, 261
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	1 cut(s)	208
MabI	ACCWGGT	1 cut(s)	297
MaeI	CTAG	3 cut(s)	99, 107, 356
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	576
MalI	GATC	3 cut(s)	81, 378, 569
MboI	GATC	3 cut(s)	79, 376, 567
MboII	GAAGA	2 cut(s)	87, 419
MfeI	CAATTG	1 cut(s)	615
MlsI	TGGCCA	1 cut(s)	526
MluCI	AATT	1 cut(s)	615
MluNI	TGGCCA	1 cut(s)	526
MlyI	GAGTC	1 cut(s)	631
MnlI	CCTC	2 cut(s)	47, 203
Mox20I	TGGCCA	1 cut(s)	526
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	526
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	526
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	5 cut(s)	29, 121, 260, 299, 327
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	4 cut(s)	29, 260, 299, 327
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	477, 611
NciI	CCSGG	1 cut(s)	121
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	3 cut(s)	79, 376, 567
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	4 cut(s)	34, 214, 323, 324
NsiI	ATGCAT	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	551
PagI	TCATGA	1 cut(s)	498
PasI	CCCWGGG	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	187, 548
PkrI	GCNGC	2 cut(s)	150, 607
PleI	GAGTC	1 cut(s)	630
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	630
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	4 cut(s)	27, 258, 297, 325
PspCI	CACGTG	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	576
PspGI	CCWGG	4 cut(s)	27, 258, 297, 325
PspN4I	GGNNCC	4 cut(s)	34, 214, 323, 324
PspPI	GGNCC	2 cut(s)	322, 479
PspPPI	RGGWCCY	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	386
SacII	CCGCGG	1 cut(s)	149
SatI	GCNGC	2 cut(s)	149, 606
Sau3AI	GATC	3 cut(s)	79, 376, 567
Sau96I	GGNCC	2 cut(s)	322, 479
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	5 cut(s)	29, 121, 260, 299, 327
SetI	ASST	7 cut(s)	214, 232, 258, 300, 352, 361, 473
SexAI	ACCWGGT	1 cut(s)	297
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	543
Sfr303I	CCGCGG	1 cut(s)	149
SfuI	TTCGAA	1 cut(s)	551
SgrBI	CCGCGG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	386
SpeI	ACTAGT	1 cut(s)	106
Sse9I	AATT	1 cut(s)	615
SsiI	CCGC	2 cut(s)	146, 148
SspMI	CTAG	3 cut(s)	99, 107, 356
StyD4I	CCNGG	5 cut(s)	27, 119, 258, 297, 325
StyI	CCWWGG	2 cut(s)	182, 475
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	5 cut(s)	23, 70, 177, 513, 551
TasI	AATT	1 cut(s)	615
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	2 cut(s)	187, 548
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	1 cut(s)	605
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	91
XspI	CTAG	3 cut(s)	99, 107, 356
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.