DDB1- and CUL4-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0008271 RchiOBHm_Chr5g0008341 |
| rosa_laevigata | RLG00000031557 RLG00000031562 |
| rosa_roxburghii | Rroxscaffold_1G00066830 Rroxscaffold_1G00067530 Rroxscaffold_1G00068190 |
| rosa_samantha | Rh5BG059700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 305 |
| AcuI | CTGAAG | 1 cut(s) | 83 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 143 |
| AluBI | AGCT | 2 cut(s) | 67, 126 |
| AluI | AGCT | 2 cut(s) | 67, 126 |
| AlwI | GGATC | 1 cut(s) | 305 |
| AspS9I | GGNCC | 1 cut(s) | 26 |
| AvaII | GGWCC | 1 cut(s) | 26 |
| BanII | GRGCYC | 1 cut(s) | 265 |
| BccI | CCATC | 3 cut(s) | 43, 137, 274 |
| BfaI | CTAG | 2 cut(s) | 234, 249 |
| Bme18I | GGWCC | 1 cut(s) | 26 |
| BmgT120I | GGNCC | 1 cut(s) | 26 |
| BmiI | GGNNCC | 2 cut(s) | 27, 28 |
| BmrI | ACTGGG | 1 cut(s) | 132 |
| BmuI | ACTGGG | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 2 cut(s) | 89, 175 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 154, 184 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 143 |
| Bse1I | ACTGG | 1 cut(s) | 138 |
| BseGI | GGATG | 1 cut(s) | 266 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 143 |
| BseNI | ACTGG | 1 cut(s) | 138 |
| BslFI | GGGAC | 1 cut(s) | 12 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 143 |
| BsmFI | GGGAC | 1 cut(s) | 12 |
| Bsp1286I | GDGCHC | 1 cut(s) | 265 |
| Bsp143I | GATC | 3 cut(s) | 236, 251, 297 |
| BspLI | GGNNCC | 2 cut(s) | 27, 28 |
| BspPI | GGATC | 1 cut(s) | 305 |
| BsrI | ACTGG | 1 cut(s) | 138 |
| BssMI | GATC | 3 cut(s) | 236, 251, 297 |
| BstF5I | GGATG | 1 cut(s) | 266 |
| BstKTI | GATC | 3 cut(s) | 239, 254, 300 |
| BstMBI | GATC | 3 cut(s) | 236, 251, 297 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 73, 132 |
| BtsCI | GGATG | 1 cut(s) | 266 |
| BtsI | GCAGTG | 1 cut(s) | 126 |
| BtsIMutI | CAGTG | 2 cut(s) | 126, 145 |
| Cfr13I | GGNCC | 1 cut(s) | 26 |
| CviAII | CATG | 2 cut(s) | 105, 255 |
| CviJI | RGCY | 6 cut(s) | 67, 76, 126, 135, 147, 263 |
| CviKI_1 | RGCY | 6 cut(s) | 67, 76, 126, 135, 147, 263 |
| DpnI | GATC | 3 cut(s) | 238, 253, 299 |
| DpnII | GATC | 3 cut(s) | 236, 251, 297 |
| Eco24I | GRGCYC | 1 cut(s) | 265 |
| Eco47I | GGWCC | 1 cut(s) | 26 |
| Eco57I | CTGAAG | 1 cut(s) | 83 |
| EcoO109I | RGGNCCY | 1 cut(s) | 26 |
| EcoT22I | ATGCAT | 1 cut(s) | 106 |
| EcoT38I | GRGCYC | 1 cut(s) | 265 |
| FaeI | CATG | 2 cut(s) | 108, 258 |
| FaiI | YATR | 8 cut(s) | 59, 106, 150, 177, 179, 181, 221, 256 |
| FaqI | GGGAC | 1 cut(s) | 12 |
| FatI | CATG | 2 cut(s) | 104, 254 |
| FokI | GGATG | 1 cut(s) | 253 |
| FriOI | GRGCYC | 1 cut(s) | 265 |
| FspBI | CTAG | 2 cut(s) | 234, 249 |
| Hin1II | CATG | 2 cut(s) | 108, 258 |
| HindIII | AAGCTT | 1 cut(s) | 65 |
| Hpy166II | GTNNAC | 2 cut(s) | 9, 206 |
| Hpy188I | TCNGA | 1 cut(s) | 302 |
| Hpy188III | TCNNGA | 3 cut(s) | 154, 249, 295 |
| Hpy8I | GTNNAC | 2 cut(s) | 9, 206 |
| HpyAV | CCTTC | 1 cut(s) | 217 |
| HpyCH4V | TGCA | 2 cut(s) | 104, 288 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 73, 132 |
| Hsp92II | CATG | 2 cut(s) | 108, 258 |
| KflI | GGGWCCC | 1 cut(s) | 26 |
| Kzo9I | GATC | 3 cut(s) | 236, 251, 297 |
| LpnPI | CCDG | 4 cut(s) | 2, 127, 151, 280 |
| MaeI | CTAG | 2 cut(s) | 234, 249 |
| MalI | GATC | 3 cut(s) | 238, 253, 299 |
| MboI | GATC | 3 cut(s) | 236, 251, 297 |
| MboII | GAAGA | 3 cut(s) | 30, 202, 205 |
| MhlI | GDGCHC | 1 cut(s) | 265 |
| MnlI | CCTC | 2 cut(s) | 40, 194 |
| Mph1103I | ATGCAT | 1 cut(s) | 106 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 73, 132 |
| NdeII | GATC | 3 cut(s) | 236, 251, 297 |
| NlaIII | CATG | 2 cut(s) | 108, 258 |
| NlaIV | GGNNCC | 2 cut(s) | 27, 28 |
| NsiI | ATGCAT | 1 cut(s) | 106 |
| PpuMI | RGGWCCY | 1 cut(s) | 26 |
| Psp5II | RGGWCCY | 1 cut(s) | 26 |
| PspN4I | GGNNCC | 2 cut(s) | 27, 28 |
| PspPI | GGNCC | 1 cut(s) | 26 |
| PspPPI | RGGWCCY | 1 cut(s) | 26 |
| Sau3AI | GATC | 3 cut(s) | 236, 251, 297 |
| Sau96I | GGNCC | 1 cut(s) | 26 |
| SduI | GDGCHC | 1 cut(s) | 265 |
| SetI | ASST | 3 cut(s) | 69, 128, 205 |
| SinI | GGWCC | 1 cut(s) | 26 |
| SmlI | CTYRAG | 2 cut(s) | 68, 154 |
| SmoI | CTYRAG | 2 cut(s) | 68, 154 |
| SspMI | CTAG | 2 cut(s) | 234, 249 |
| TscAI | CASTG | 2 cut(s) | 126, 145 |
| TspDTI | ATGAA | 1 cut(s) | 236 |
| TspRI | CASTG | 2 cut(s) | 126, 145 |
| VpaK11BI | GGWCC | 1 cut(s) | 26 |
| XbaI | TCTAGA | 1 cut(s) | 248 |
| XspI | CTAG | 2 cut(s) | 234, 249 |
| Zsp2I | ATGCAT | 1 cut(s) | 106 |