Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0019414

Physical Location & Seq

Genomic Coordinates Forward (+)

4917024 .. 4918960

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTACCAAGATATATGATGCCTCTCAGTGATGATAAGAGAATAGCAACTGGTTGTTGGGATGGTGAAGTGAGGATAGGTGAAATCTTGGAGGATGGTCGAGTTCATACAAAAAACTTGGGTAGTTACGAGTATGGGGTTCGAAGGTCACTGTTGAGCCTGGAAACCCTCATATATAGTCTTTATAGCTGTGGTGAGGATGGCTTCGTTCGACAGTTTGATCTGCGAAGCAGTTCTTCTAGAGAACTAGTGCAATATTGCTCCCGGCTGTCAAAGGGAAAACAAAACCCGCGGCAAATGGCGTTGAGTGATATAGTAATCGACCCAAGGAATCCATATTATTTTTGCTTAGGAGGTACCGATGCATATGCACGTGTCTATGACATCCGAAAAAATCAGCTCCAGGGAGATGAGCCAGTGGACATTTTTGCCCAGACGACCTGGTTGAGACGAGCAGGAGTTGAGTCTCTGGGTTGGCTTACTCCAAGTCAGGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

166

Amino Acids

19.0

Weight (kDa)

6.59

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019414)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0008271 RchiOBHm_Chr5g0008341
rosa_laevigata	RLG00000031557 RLG00000031562
rosa_roxburghii	Rroxscaffold_1G00066830 Rroxscaffold_1G00067530 Rroxscaffold_1G00068190
rosa_samantha	Rh5BG059700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	356
AccII	CGCG	1 cut(s)	292
AciI	CCGC	2 cut(s)	290, 292
AcvI	CACGTG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	373
AhlI	ACTAGT	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	159, 402, 440
AluBI	AGCT	2 cut(s)	189, 400
AluI	AGCT	2 cut(s)	189, 400
Alw26I	GTCTC	2 cut(s)	442, 471
Asp700I	GAANNNNTTC	1 cut(s)	232
Asp718I	GGTACC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	3 cut(s)	77, 92, 206
AsuII	TTCGAA	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	356
BbrPI	CACGTG	1 cut(s)	374
BccI	CCATC	3 cut(s)	56, 89, 194
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	3 cut(s)	161, 404, 442
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	442, 471
BcuI	ACTAGT	1 cut(s)	247
BfaI	CTAG	3 cut(s)	240, 248, 499
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	4 cut(s)	161, 265, 404, 442
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	4 cut(s)	161, 265, 404, 442
BmsI	GCATC	2 cut(s)	9, 352
BpmI	CTGGAG	1 cut(s)	386
Bpu10I	CCTNAGC	1 cut(s)	349
Bpu14I	TTCGAA	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	265
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	290, 326, 403
Bse1I	ACTGG	2 cut(s)	55, 416
BseBI	CCWGG	3 cut(s)	161, 404, 442
BseDI	CCNNGG	3 cut(s)	290, 326, 403
BseGI	GGATG	4 cut(s)	67, 100, 205, 384
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	55, 416
Bsh1236I	CGCG	1 cut(s)	292
BshNI	GGYRCC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	442, 471
BsmBI	CGTCTC	1 cut(s)	442
Bsp119I	TTCGAA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	290, 292
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	55, 416
BssECI	CCNNGG	3 cut(s)	290, 326, 403
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	3 cut(s)	161, 404, 442
Bst4CI	ACNGT	2 cut(s)	153, 216
BstBAI	YACGTR	1 cut(s)	374
BstBI	TTCGAA	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	26, 349
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	4 cut(s)	67, 100, 205, 384
BstFNI	CGCG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	2 cut(s)	442, 471
BstMBI	GATC	1 cut(s)	220
BstNI	CCWGG	3 cut(s)	161, 404, 442
BstSCI	CCNGG	4 cut(s)	159, 263, 402, 440
BstUI	CGCG	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	4 cut(s)	67, 100, 205, 384
BtsIMutI	CAGTG	3 cut(s)	34, 149, 423
Cfr42I	CCGCGG	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	357
CviJI	RGCY	7 cut(s)	159, 189, 204, 268, 400, 415, 478
CviKI_1	RGCY	7 cut(s)	159, 189, 204, 268, 400, 415, 478
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	2 cut(s)	26, 349
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	326
Eco72I	CACGTG	1 cut(s)	374
EcoRII	CCWGG	3 cut(s)	159, 402, 440
EcoT14I	CCWWGG	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	326
Esp3I	CGTCTC	1 cut(s)	442
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FauI	CCCGC	1 cut(s)	297
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	4 cut(s)	74, 107, 212, 371
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	3 cut(s)	240, 248, 499
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	386
HapII	CCGG	1 cut(s)	265
HinfI	GANTC	2 cut(s)	331, 464
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	3 cut(s)	77, 92, 206
Hpy166II	GTNNAC	2 cut(s)	421, 496
Hpy188I	TCNGA	1 cut(s)	389
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	2 cut(s)	421, 496
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	2 cut(s)	153, 216
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	3 cut(s)	253, 365, 371
HpyF3I	CTNAG	2 cut(s)	26, 349
HpySE526I	ACGT	1 cut(s)	373
KpnI	GGTACC	1 cut(s)	360
KspI	CCGCGG	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	266, 405
LweI	GCATC	2 cut(s)	9, 352
MabI	ACCWGGT	1 cut(s)	440
MaeI	CTAG	3 cut(s)	240, 248, 499
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	3 cut(s)	3, 125, 147
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	6 cut(s)	33, 66, 85, 179, 190, 347
Mph1103I	ATGCAT	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	4 cut(s)	161, 265, 404, 442
MvaI	CCWGG	3 cut(s)	161, 404, 442
MvnI	CGCG	1 cut(s)	292
NciI	CCSGG	1 cut(s)	265
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	472
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	159, 402, 440
PspCI	CACGTG	1 cut(s)	374
PspGI	CCWGG	3 cut(s)	159, 402, 440
PspN4I	GGNNCC	1 cut(s)	358
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SacII	CCGCGG	1 cut(s)	293
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	4 cut(s)	161, 265, 404, 442
SetI	ASST	8 cut(s)	82, 149, 191, 358, 376, 402, 443, 495
SexAI	ACCWGGT	1 cut(s)	440
SfaNI	GCATC	2 cut(s)	9, 352
Sfr303I	CCGCGG	1 cut(s)	293
SfuI	TTCGAA	1 cut(s)	142
SgrBI	CCGCGG	1 cut(s)	293
SpeI	ACTAGT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	290, 292
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	3 cut(s)	240, 248, 499
StyD4I	CCNGG	4 cut(s)	159, 263, 402, 440
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	153, 216
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	4 cut(s)	100, 142, 211, 321
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	3 cut(s)	34, 156, 423
TseFI	GTSAC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	34, 156, 423
XbaI	TCTAGA	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	3 cut(s)	240, 248, 499
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.