Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019414

Physical Location & Seq

Genomic Coordinates Reverse (-)

6214295 .. 6219314

Gene Structure 5020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031562

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCTCTATGGTGGAGCAACTGTTTGGAGCTCTGATTCGAACTCGAAATCGAGGCTTATAGAGAAGATGATCAGATCTGGGGAGAAGACGATGAACAGTGGAGAGTTTTCGACCACTGAAACCGGGTTGGACCAGAAACAAGAGGAAGAAAGCAATTGCCAAGTGGTGAAACAAGACATGACAAACAAGGTGAGGCTAGGTGAAGTTTTGGAGGATGGTCGAGTTCATACAAGAACTTGGGGAGGTACCAACGTTGTGTTTACAAGCTCGCTGTCGAGCCTGGGAATCCCTGCAAACTCTATAGATGTGGTGAGGATGGCTTCATTCGAGAGTAAGGATCTCATATATTTGTTCCAGAAGAATATGGGATTTGGAAGTGCCTCGTCATCTTCTACCCTAGCTGAAGACAATGACAAGCCACTAGCTTTTTTCGGACATAGAAATGACTTATTTACGATAGGTGTGAGCTTTTATGGCCCAAATGATGAATATGCCATGAGTGGGAGTGCGTGTGACCATATATTTATTTGGAAGAAGAATGGAGCTAAACTTTTTCGTGTTATGAAGGTTGAAACAAGTCAAGTCAAGCCTGGTCCGCATTTGCCGATTATTGCCAACTTGTGGAATAGAAATGAATGTAAAGCTCTACAGTCCTATGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

222

Amino Acids

24.54

Weight (kDa)

6.44

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019414)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0008271 RchiOBHm_Chr5g0008341
rosa_laevigata	RLG00000031557 RLG00000031562
rosa_roxburghii	Rroxscaffold_1G00066830 Rroxscaffold_1G00067530 Rroxscaffold_1G00068190
rosa_samantha	Rh5BG059700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	621
AciI	CCGC	1 cut(s)	596
AclI	AACGTT	1 cut(s)	252
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	501, 621
AgsI	TTSAA	1 cut(s)	572
AjnI	CCWGG	2 cut(s)	279, 589
AluBI	AGCT	7 cut(s)	30, 267, 401, 425, 468, 545, 644
AluI	AGCT	7 cut(s)	30, 267, 401, 425, 468, 545, 644
Alw21I	GWGCWC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	475
Asp718I	GGTACC	1 cut(s)	245
AspS9I	GGNCC	3 cut(s)	130, 476, 593
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	4 cut(s)	178, 202, 212, 322
AsuII	TTCGAA	1 cut(s)	38
AvaII	GGWCC	2 cut(s)	130, 593
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	92, 411
Bbv12I	GWGCWC	1 cut(s)	32
BccI	CCATC	2 cut(s)	209, 310
BciT130I	CCWGG	2 cut(s)	281, 591
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	124
BfaI	CTAG	3 cut(s)	197, 398, 422
BfmI	CTRYAG	2 cut(s)	300, 647
BglII	AGATCT	1 cut(s)	74
Bme1390I	CCNGG	3 cut(s)	124, 281, 591
Bme18I	GGWCC	2 cut(s)	130, 593
BmgT120I	GGNCC	3 cut(s)	130, 476, 593
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	3 cut(s)	124, 281, 591
BpiI	GAAGAC	2 cut(s)	92, 411
Bpu14I	TTCGAA	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	501, 621
BseBI	CCWGG	2 cut(s)	281, 591
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	220, 321
BseLI	CCNNNNNNNGG	2 cut(s)	501, 621
BshFI	GGCC	1 cut(s)	477
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	501, 621
BsnI	GGCC	1 cut(s)	477
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	69, 74, 337
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	3 cut(s)	69, 74, 337
Bst2UI	CCWGG	2 cut(s)	281, 591
Bst4CI	ACNGT	3 cut(s)	22, 98, 651
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	220, 321
BstKTI	GATC	3 cut(s)	72, 77, 340
BstMBI	GATC	3 cut(s)	69, 74, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 595
BstNI	CCWGG	2 cut(s)	281, 591
BstSCI	CCNGG	3 cut(s)	122, 279, 589
BstSFI	CTRYAG	2 cut(s)	300, 647
BstV2I	GAAGAC	2 cut(s)	92, 411
BstX2I	RGATCY	2 cut(s)	74, 337
BstYI	RGATCY	2 cut(s)	74, 337
BsuRI	GGCC	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	220, 321
BtsIMutI	CAGTG	2 cut(s)	103, 114
Cac8I	GCNNGC	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	130, 476, 593
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	2 cut(s)	178, 496
CviQI	GTAC	1 cut(s)	246
DpnI	GATC	3 cut(s)	71, 76, 339
DpnII	GATC	3 cut(s)	69, 74, 337
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	130, 593
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	279, 589
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	2 cut(s)	181, 499
FatI	CATG	2 cut(s)	177, 495
FbaI	TGATCA	1 cut(s)	69
FokI	GGATG	2 cut(s)	227, 328
FriOI	GRGCYC	1 cut(s)	32
FspBI	CTAG	3 cut(s)	197, 398, 422
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	2 cut(s)	181, 499
HinfI	GANTC	2 cut(s)	35, 285
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	4 cut(s)	178, 202, 212, 322
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	3 cut(s)	34, 74, 434
Hpy188III	TCNNGA	2 cut(s)	328, 355
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	559
HpyCH4III	ACNGT	3 cut(s)	22, 98, 651
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 595
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	181, 499
KpnI	GGTACC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	69, 74, 337
LmnI	GCTCC	3 cut(s)	14, 27, 542
LpnPI	CCDG	9 cut(s)	63, 136, 146, 266, 293, 303, 368, 576, 603
MaeI	CTAG	3 cut(s)	197, 398, 422
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	3 cut(s)	71, 76, 339
MboI	GATC	3 cut(s)	69, 74, 337
MboII	GAAGA	8 cut(s)	76, 97, 158, 370, 381, 416, 544, 547
MfeI	CAATTG	1 cut(s)	154
MflI	RGATCY	2 cut(s)	74, 337
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	7 cut(s)	45, 136, 186, 205, 236, 306, 391
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	3 cut(s)	124, 281, 591
MunI	CAATTG	1 cut(s)	154
MvaI	CCWGG	2 cut(s)	281, 591
MwoI	GCNNNNNNNGC	2 cut(s)	474, 595
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	3 cut(s)	69, 74, 337
NlaIII	CATG	2 cut(s)	181, 499
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	512
NspV	TTCGAA	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	35, 285
PflMI	CCANNNNNTGG	1 cut(s)	621
Psp124BI	GAGCTC	1 cut(s)	32
Psp1406I	AACGTT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	279, 589
PspGI	CCWGG	2 cut(s)	279, 589
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	3 cut(s)	130, 476, 593
PsuI	RGATCY	2 cut(s)	74, 337
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	32
Sau3AI	GATC	3 cut(s)	69, 74, 337
Sau96I	GGNCC	3 cut(s)	130, 476, 593
ScrFI	CCNGG	3 cut(s)	124, 281, 591
SduI	GDGCHC	1 cut(s)	32
SfcI	CTRYAG	2 cut(s)	300, 647
SfuI	TTCGAA	1 cut(s)	38
SinI	GGWCC	2 cut(s)	130, 593
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	596
SspMI	CTAG	3 cut(s)	197, 398, 422
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	122, 279, 589
TaaI	ACNGT	3 cut(s)	22, 98, 651
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	7 cut(s)	38, 44, 50, 110, 220, 275, 327
TasI	AATT	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	35, 285
TscAI	CASTG	2 cut(s)	103, 121
TseFI	GTSAC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	6 cut(s)	107, 215, 312, 501, 578, 648
TspRI	CASTG	2 cut(s)	103, 121
Van91I	CCANNNNNTGG	1 cut(s)	621
VpaK11BI	GGWCC	2 cut(s)	130, 593
XspI	CTAG	3 cut(s)	197, 398, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.