Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006233

Physical Location & Seq

Genomic Coordinates Forward (+)

8696011 .. 8699209

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCCATTCCAGGAAGAGAAGATTAGTGCCAACACAAGTTCCCAACCCAAAAATGTGAATTTTGGATATACAAAGAAAAAGCTAGATTTGCCTGTGCAGAATAATCTTCTGACAAAGTACTTTTGCTTTGCTTCTCTTGAAGCAAAGAGAAAATTCAGGGCACCACGATCATCACCTGATGATCCAAGTCCAATTTCTAGTTCTAGTCTCAGCCCAGATGAGAATACCTCTGTGGATGATGCTTTTGGTAAAACCAACTTCTCAGGTTCTTCTCCCGGTCTAGATGAACATGTCTCTGTGGATGATGCCGTTTGTACAACAAATTACTCAGAGCCCATTCTGCTTGGCCCTGAAAACATTGGAAATATGCCTCCTAGTGATTCAGTAGAAGATGGTTTTCCCACTGATTTATCAGAATCTCCAAATGATGATATGGCGGGCAAGACAAGAAGTCCAGACAGTACATTGTTACAACAACCCATACATTCAATTCACAAACCCTGTTTAACACTGCATAGGGAGCGTGAATGTAAGAATGCCCAAGGCACATTTGAGGGTAAAACAAGGACAGAGAACAGAAAGGTCATTGTAAGAAGTCCTTATTTTAAGGAGAAATCAAACAATGAAAATAAGCAGGAAGATAAACAAGAAAAAATCTTGTTGAAGGATTCTCTTGGCAACAATATGCATGATAATGCAGATCCTGAGAGTGCCCCTTTCGGGAATAGCCATTTCCCTAGAAAACTTGTGAAAAGGAAAAACTCCCCAAATGACAGCGTTCAAGAGGACGATGGGAAACCCAAACAAATGTGTACTAATGCATCACTACCTGGTAACGGTCCCTCTGCTTCCAGCCATGAAGCAACATTTAAGGACACAAAAACTGAAGAAGGAAGATTTGGATCCAACATTTCCCATTTGGGTCGTTACTCTGATATAGCAGAGAAGTCGATGGAAAATTTTGTTTCAGTAATATCATCATTTAGATTTGGCTCATCTGGTTCTCGTGCAAGTGGCCTCCGTGCTCCTCTGAAAGATGTTCGAAATACTTGTACCAATAGGACAACTGTTGGTGCTGACTTTAGCCAATTTGAATATGTACCAAATAATCAAAAGACAAAAACAACATCTCGAAAACGAAGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

382

Amino Acids

42.27

Weight (kDa)

8.1

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29630 AT1G29630 AT1G29630
fragaria_vesca	FvH4_3g06460 FvH4_3g06460 FvH4_3g06460 FvH4_3g06460 FvH4_3g06460
malus_domestica	MD10G1269500.v1.1
prunus_persica	Prupe.4G072200_v2.0.a1
pyrus_communis	pycom10g22570
rosa_chinensis	RchiOBHm_Chr5g0012821 RchiOBHm_Chr5g0012831
rosa_laevigata	RLG00000031958
rosa_multiflora	Rmu_sc0002365.1_g000036 Rmu_sc0022594.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063780
rosa_rugosa	Rorug05G0004500 Rorug05G0004500
rosa_samantha	Rh5AG098300 Rh5AG098400 Rh5BG095200 Rh5CG107200 Rh5CG107300 Rh5DG093900 Rh5DG094000
rosa_wichuraiana	Rw5G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	4 cut(s)	176, 695, 897, 910
AcsI	RAATTY	4 cut(s)	58, 152, 958, 1143
AcuI	CTGAAG	1 cut(s)	906
AfaI	GTAC	6 cut(s)	119, 316, 463, 814, 1054, 1101
AfiI	CCNNNNNNNGG	2 cut(s)	720, 836
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	5 cut(s)	140, 489, 664, 782, 1094
AhdI	GACNNNNNGTC	1 cut(s)	450
AjnI	CCWGG	2 cut(s)	9, 829
AjuI	GAANNNNNNNTTGG	6 cut(s)	178, 184, 210, 216, 882, 914
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	1027
Alw26I	GTCTC	2 cut(s)	212, 298
AlwI	GGATC	4 cut(s)	176, 695, 897, 910
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	2 cut(s)	346, 1015
ApoI	RAATTY	4 cut(s)	58, 152, 958, 1143
AspS9I	GGNCC	2 cut(s)	347, 839
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	165
AsuII	TTCGAA	1 cut(s)	1042
AvaII	GGWCC	1 cut(s)	839
BaeGI	GKGCMC	2 cut(s)	163, 715
BamHI	GGATCC	1 cut(s)	902
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	1027
BccI	CCATC	3 cut(s)	386, 785, 946
BceAI	ACGGC	1 cut(s)	293
BcgI	CGANNNNNNTGC	2 cut(s)	930, 964
BciT130I	CCWGG	2 cut(s)	11, 831
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	212, 298
BfaI	CTAG	6 cut(s)	83, 198, 204, 281, 375, 738
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	3 cut(s)	11, 276, 831
Bme18I	GGWCC	1 cut(s)	839
BmeRI	GACNNNNNGTC	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	347, 839
BmiI	GGNNCC	3 cut(s)	162, 841, 904
BmrFI	CCNGG	3 cut(s)	11, 276, 831
BmsI	GCATC	3 cut(s)	229, 295, 830
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
Bpu14I	TTCGAA	1 cut(s)	1042
BpuMI	CCSGG	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	901
BsaJI	CCNNGG	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	2 cut(s)	720, 836
Bse8I	GATNNNNATC	1 cut(s)	901
BseBI	CCWGG	2 cut(s)	11, 831
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	241, 307
BseJI	GATNNNNATC	1 cut(s)	901
BseLI	CCNNNNNNNGG	2 cut(s)	720, 836
BseMII	CTCAG	4 cut(s)	223, 276, 342, 696
BseRI	GAGGAG	1 cut(s)	1017
BseSI	GKGCMC	2 cut(s)	163, 715
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	348, 1017
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	1027
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	825
BslI	CCNNNNNNNGG	2 cut(s)	720, 836
BsmAI	GTCTC	2 cut(s)	212, 298
BsmFI	GGGAC	1 cut(s)	825
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	348, 1017
Bsp119I	TTCGAA	1 cut(s)	1042
Bsp1286I	GDGCHC	4 cut(s)	163, 336, 715, 1027
Bsp1407I	TGTACA	1 cut(s)	314
Bsp143I	GATC	4 cut(s)	167, 181, 700, 902
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	2 cut(s)	348, 1017
BspCNI	CTCAG	4 cut(s)	222, 275, 341, 697
BspLI	GGNNCC	3 cut(s)	162, 841, 904
BspPI	GGATC	4 cut(s)	176, 695, 897, 910
BspT104I	TTCGAA	1 cut(s)	1042
BspT107I	GGYRCC	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	4 cut(s)	167, 181, 700, 902
BssSI	CACGAG	1 cut(s)	1005
BssT1I	CCWWGG	1 cut(s)	541
Bst2BI	CACGAG	1 cut(s)	1005
Bst2UI	CCWGG	2 cut(s)	11, 831
Bst4CI	ACNGT	3 cut(s)	461, 839, 1069
Bst6I	CTCTTC	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	1042
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	4 cut(s)	209, 262, 328, 705
BstF5I	GGATG	2 cut(s)	241, 307
BstKTI	GATC	4 cut(s)	170, 184, 703, 905
BstMAI	GTCTC	2 cut(s)	212, 298
BstMBI	GATC	4 cut(s)	167, 181, 700, 902
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 340, 520
BstNI	CCWGG	2 cut(s)	11, 831
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	9, 274, 829
BstSLI	GKGCMC	2 cut(s)	163, 715
BstX2I	RGATCY	2 cut(s)	700, 902
BstYI	RGATCY	2 cut(s)	700, 902
BsuRI	GGCC	2 cut(s)	348, 1017
BtsCI	GGATG	2 cut(s)	241, 307
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	2 cut(s)	402, 509
Cac8I	GCNNGC	1 cut(s)	439
CaiI	CAGNNNCTG	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	347, 839
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	6 cut(s)	118, 315, 462, 813, 1053, 1100
CviAII	CATG	3 cut(s)	290, 689, 857
CviJI	RGCY	9 cut(s)	82, 213, 334, 348, 729, 855, 993, 1017, 1086
CviKI_1	RGCY	9 cut(s)	82, 213, 334, 348, 729, 855, 993, 1017, 1086
CviQI	GTAC	6 cut(s)	118, 315, 462, 813, 1053, 1100
DdeI	CTNAG	4 cut(s)	209, 262, 328, 705
DpnI	GATC	4 cut(s)	169, 183, 702, 904
DpnII	GATC	4 cut(s)	167, 181, 700, 902
DriI	GACNNNNNGTC	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	839
Eco57I	CTGAAG	1 cut(s)	906
EcoRII	CCWGG	2 cut(s)	9, 829
EcoT14I	CCWWGG	1 cut(s)	541
EcoT22I	ATGCAT	2 cut(s)	690, 823
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	541
FaeI	CATG	3 cut(s)	293, 692, 860
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FaqI	GGGAC	1 cut(s)	825
FatI	CATG	3 cut(s)	289, 688, 856
FauI	CCCGC	1 cut(s)	430
FokI	GGATG	2 cut(s)	248, 314
FriOI	GRGCYC	1 cut(s)	336
FspBI	CTAG	6 cut(s)	83, 198, 204, 281, 375, 738
HaeIII	GGCC	2 cut(s)	348, 1017
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	3 cut(s)	293, 692, 860
HinfI	GANTC	3 cut(s)	380, 416, 668
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	813
Hpy188I	TCNGA	5 cut(s)	111, 331, 415, 934, 1032
Hpy188III	TCNNGA	7 cut(s)	137, 281, 455, 704, 721, 782, 1131
Hpy8I	GTNNAC	1 cut(s)	813
HpyAV	CCTTC	2 cut(s)	658, 884
HpyCH4III	ACNGT	3 cut(s)	461, 839, 1069
HpyCH4V	TGCA	6 cut(s)	97, 514, 688, 698, 821, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 340, 520
HpyF3I	CTNAG	4 cut(s)	209, 262, 328, 705
Hsp92II	CATG	3 cut(s)	293, 692, 860
Kzo9I	GATC	4 cut(s)	167, 181, 700, 902
LmnI	GCTCC	2 cut(s)	520, 1030
LweI	GCATC	3 cut(s)	229, 295, 830
MabI	ACCWGGT	1 cut(s)	829
MaeI	CTAG	6 cut(s)	83, 198, 204, 281, 375, 738
MaeIII	GTNAC	3 cut(s)	468, 833, 926
MalI	GATC	4 cut(s)	169, 183, 702, 904
MboI	GATC	4 cut(s)	167, 181, 700, 902
MboII	GAAGA	8 cut(s)	26, 31, 98, 261, 401, 650, 899, 906
MflI	RGATCY	2 cut(s)	700, 902
MhlI	GDGCHC	4 cut(s)	163, 336, 715, 1027
MluCI	AATT	8 cut(s)	58, 152, 192, 322, 489, 958, 1088, 1143
MmeI	TCCRAC	1 cut(s)	930
MnlI	CCTC	7 cut(s)	238, 381, 547, 778, 853, 1028, 1038
Mph1103I	ATGCAT	2 cut(s)	690, 823
MseI	TTAA	3 cut(s)	506, 606, 870
MslI	CAYNNNNRTG	1 cut(s)	693
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	3 cut(s)	11, 276, 831
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	2 cut(s)	11, 831
MwoI	GCNNNNNNNGC	3 cut(s)	88, 340, 520
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	4 cut(s)	167, 181, 700, 902
NlaIII	CATG	3 cut(s)	293, 692, 860
NlaIV	GGNNCC	3 cut(s)	162, 841, 904
NsiI	ATGCAT	2 cut(s)	690, 823
NspI	RCATGY	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	1042
PciI	ACATGT	1 cut(s)	289
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	3 cut(s)	380, 416, 668
PfoI	TCCNGGA	1 cut(s)	9
PscI	ACATGT	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	9, 829
PspGI	CCWGG	2 cut(s)	9, 829
PspN4I	GGNNCC	3 cut(s)	162, 841, 904
PspPI	GGNCC	2 cut(s)	347, 839
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	2 cut(s)	700, 902
RsaI	GTAC	6 cut(s)	119, 316, 463, 814, 1054, 1101
RsaNI	GTAC	6 cut(s)	118, 315, 462, 813, 1053, 1100
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	3 cut(s)	506, 606, 870
Sau3AI	GATC	4 cut(s)	167, 181, 700, 902
Sau96I	GGNCC	2 cut(s)	347, 839
ScaI	AGTACT	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	11, 276, 831
SduI	GDGCHC	4 cut(s)	163, 336, 715, 1027
SetI	ASST	6 cut(s)	84, 178, 230, 268, 585, 832
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	3 cut(s)	229, 295, 830
SfuI	TTCGAA	1 cut(s)	1042
SinI	GGWCC	1 cut(s)	839
SmiMI	CAYNNNNRTG	1 cut(s)	693
Sse9I	AATT	8 cut(s)	58, 152, 192, 322, 489, 958, 1088, 1143
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	6 cut(s)	83, 198, 204, 281, 375, 738
StyD4I	CCNGG	3 cut(s)	9, 274, 829
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	3 cut(s)	461, 839, 1069
TaqI	TCGA	3 cut(s)	950, 1042, 1132
TasI	AATT	8 cut(s)	58, 152, 192, 322, 489, 958, 1088, 1143
TatI	WGTACW	4 cut(s)	117, 314, 461, 812
TfiI	GAWTC	3 cut(s)	380, 416, 668
Tru1I	TTAA	3 cut(s)	506, 606, 870
Tru9I	TTAA	3 cut(s)	506, 606, 870
TscAI	CASTG	2 cut(s)	409, 516
TspDTI	ATGAA	3 cut(s)	300, 639, 873
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	2 cut(s)	409, 516
VpaK11BI	GGWCC	1 cut(s)	839
XapI	RAATTY	4 cut(s)	58, 152, 958, 1143
XbaI	TCTAGA	1 cut(s)	280
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	6 cut(s)	83, 198, 204, 281, 375, 738
ZrmI	AGTACT	1 cut(s)	119
Zsp2I	ATGCAT	2 cut(s)	690, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.