Rh5AG098400

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006233
Physical Location & Seq
Forward (+)
9128771 .. 9131840
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG098400.1

Sequence Viewer

Length: 852 bp
ATGCCATTCCAGCAACAGGAAGAGAAGATTAGTGCCAACACAAGTTCCCAACCCAAAAATGTGAATTTTGGATATACAAAGAAAAAGCTAGATTTGCCTGTGCAGAATAATCTTCTGACAAAGTACTTTTGCTTTGCTTCTCTTGAAGCAAAGAGAAAATTCAGGGCACCACGATCATCACCTGATGATCCAAGTCCAATTTCTAGTTCTAGTCTCAGCCCAGATGAGAATACCTCTGTGGATGATGCTTTTGGTAAAACCAACTTCTCAGGTTCTTCTCCCGGTCTAGATGAACATGTCTCTGTGGATGATGCCGTTTGTACAACAAATTACTCAGAGCCCATTATGCTTGACCCTGAAAACATTGGAAATACTCCTCCTAGTGATTCAGTAGAAGATGGTTTTCCCACTGATTTATCAGAATCTCCAAATGATGATATGGCGGGCAAGACAAGAAGTCCAGACAGTACATTGTTACAACAACCCATACATTCAATTCACAAACCCTGTTTAACACTGCATAGGGAGCGTGAATGTAAGAATGCCCAAGGCACATTTGAGGGTAAAACAAGGACAGAGAACAGAAAGGTCATTGTAAGAAGTCCTTATTTTAAGGAGAAATCAAACAATGAAAATAAGCAGGAAGATAAACAAGAAAAAATCTTGTTGAAGGATTCTCTTGGCAACAATATGCATGATAATGCAGATCCTGAGAGTGCCCCTTTCAGGAATAGCCATTTCCCTAGAAAACTTGTGAAAAGGAAAAACTCCCCAAATGACAGCATTCAAGAGGACAATGGGAAACCCAAACAAATGTGTACTAATGCATCACTACCTGGTAACGGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

283

Amino Acids

31.5

Weight (kDa)

6.12

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AciI CCGC 1 cut(s) 443
AclWI GGATC 2 cut(s) 182, 701
AcsI RAATTY 2 cut(s) 64, 158
AfaI GTAC 4 cut(s) 125, 322, 469, 820
AfiI CCNNNNNNNGG 3 cut(s) 16, 726, 842
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 4 cut(s) 146, 495, 670, 788
AhdI GACNNNNNGTC 1 cut(s) 456
AjnI CCWGG 1 cut(s) 835
AjuI GAANNNNNNNTTGG 4 cut(s) 184, 190, 216, 222
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 218, 304
AlwI GGATC 2 cut(s) 182, 701
AlwNI CAGNNNCTG 1 cut(s) 710
ApoI RAATTY 2 cut(s) 64, 158
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 171
BaeGI GKGCMC 2 cut(s) 169, 721
BanI GGYRCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 342
BccI CCATC 1 cut(s) 392
BceAI ACGGC 1 cut(s) 299
BciT130I CCWGG 1 cut(s) 837
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 218, 304
BfaI CTAG 6 cut(s) 89, 204, 210, 287, 381, 744
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 2 cut(s) 282, 837
BmeRI GACNNNNNGTC 1 cut(s) 456
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 2 cut(s) 282, 837
BmsI GCATC 3 cut(s) 235, 301, 836
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpuMI CCSGG 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 547
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 726, 842
BseBI CCWGG 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 2 cut(s) 247, 313
BseLI CCNNNNNNNGG 3 cut(s) 16, 726, 842
BseMII CTCAG 4 cut(s) 229, 282, 348, 702
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 2 cut(s) 169, 721
BsgI GTGCAG 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 3 cut(s) 16, 726, 842
BsmAI GTCTC 2 cut(s) 218, 304
BsmI GAATGC 2 cut(s) 547, 783
Bsp1286I GDGCHC 3 cut(s) 169, 342, 721
Bsp1407I TGTACA 1 cut(s) 320
Bsp143I GATC 3 cut(s) 173, 187, 706
BspACI CCGC 1 cut(s) 443
BspCNI CTCAG 4 cut(s) 228, 281, 347, 703
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 2 cut(s) 182, 701
BspT107I GGYRCC 1 cut(s) 166
BsrGI TGTACA 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 3 cut(s) 173, 187, 706
BssT1I CCWWGG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 2 cut(s) 467, 845
Bst6I CTCTTC 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 4 cut(s) 215, 268, 334, 711
BstF5I GGATG 2 cut(s) 247, 313
BstKTI GATC 3 cut(s) 176, 190, 709
BstMAI GTCTC 2 cut(s) 218, 304
BstMBI GATC 3 cut(s) 173, 187, 706
BstMWI GCNNNNNNNGC 4 cut(s) 10, 94, 346, 526
BstNI CCWGG 1 cut(s) 837
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 280, 835
BstSLI GKGCMC 2 cut(s) 169, 721
BstX2I RGATCY 1 cut(s) 706
BstYI RGATCY 1 cut(s) 706
BtsCI GGATG 2 cut(s) 247, 313
BtsI GCAGTG 1 cut(s) 515
BtsIMutI CAGTG 2 cut(s) 408, 515
Cac8I GCNNGC 1 cut(s) 445
CaiI CAGNNNCTG 1 cut(s) 710
CsiI ACCWGGT 1 cut(s) 835
Csp6I GTAC 4 cut(s) 124, 321, 468, 819
CviAII CATG 2 cut(s) 296, 695
CviJI RGCY 4 cut(s) 88, 219, 340, 735
CviKI_1 RGCY 4 cut(s) 88, 219, 340, 735
CviQI GTAC 4 cut(s) 124, 321, 468, 819
DdeI CTNAG 4 cut(s) 215, 268, 334, 711
DpnI GATC 3 cut(s) 175, 189, 708
DpnII GATC 3 cut(s) 173, 187, 706
DriI GACNNNNNGTC 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 835
EcoT14I CCWWGG 1 cut(s) 547
EcoT22I ATGCAT 2 cut(s) 696, 829
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 2 cut(s) 299, 698
FaiI YATR 8 cut(s) 75, 297, 347, 440, 488, 522, 692, 696
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FatI CATG 2 cut(s) 295, 694
FauI CCCGC 1 cut(s) 436
FokI GGATG 2 cut(s) 254, 320
FriOI GRGCYC 1 cut(s) 342
FspBI CTAG 6 cut(s) 89, 204, 210, 287, 381, 744
HapII CCGG 1 cut(s) 282
Hin1II CATG 2 cut(s) 299, 698
HinfI GANTC 3 cut(s) 386, 422, 674
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 171
Hpy166II GTNNAC 1 cut(s) 819
Hpy188I TCNGA 3 cut(s) 117, 337, 421
Hpy188III TCNNGA 6 cut(s) 143, 287, 461, 710, 727, 788
Hpy8I GTNNAC 1 cut(s) 819
HpyAV CCTTC 1 cut(s) 664
HpyCH4III ACNGT 2 cut(s) 467, 845
HpyCH4V TGCA 5 cut(s) 103, 520, 694, 704, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 94, 346, 526
HpyF3I CTNAG 4 cut(s) 215, 268, 334, 711
Hsp92II CATG 2 cut(s) 299, 698
Kzo9I GATC 3 cut(s) 173, 187, 706
LmnI GCTCC 1 cut(s) 526
LweI GCATC 3 cut(s) 235, 301, 836
MabI ACCWGGT 1 cut(s) 835
MaeI CTAG 6 cut(s) 89, 204, 210, 287, 381, 744
MaeIII GTNAC 2 cut(s) 474, 839
MalI GATC 3 cut(s) 175, 189, 708
MboI GATC 3 cut(s) 173, 187, 706
MboII GAAGA 6 cut(s) 32, 37, 104, 267, 407, 656
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 3 cut(s) 169, 342, 721
MluCI AATT 5 cut(s) 64, 158, 198, 328, 495
MnlI CCTC 4 cut(s) 244, 387, 553, 784
Mph1103I ATGCAT 2 cut(s) 696, 829
MseI TTAA 2 cut(s) 512, 612
MslI CAYNNNNRTG 1 cut(s) 699
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 2 cut(s) 282, 837
Mva1269I GAATGC 2 cut(s) 547, 783
MvaI CCWGG 1 cut(s) 837
MwoI GCNNNNNNNGC 4 cut(s) 10, 94, 346, 526
NciI CCSGG 1 cut(s) 282
NdeII GATC 3 cut(s) 173, 187, 706
NlaIII CATG 2 cut(s) 299, 698
NlaIV GGNNCC 1 cut(s) 168
NsiI ATGCAT 2 cut(s) 696, 829
NspI RCATGY 1 cut(s) 299
PciI ACATGT 1 cut(s) 295
PctI GAATGC 2 cut(s) 547, 783
PfeI GAWTC 3 cut(s) 386, 422, 674
PscI ACATGT 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 835
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 1 cut(s) 168
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 1 cut(s) 706
RsaI GTAC 4 cut(s) 125, 322, 469, 820
RsaNI GTAC 4 cut(s) 124, 321, 468, 819
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 2 cut(s) 512, 612
Sau3AI GATC 3 cut(s) 173, 187, 706
ScaI AGTACT 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 282, 837
SduI GDGCHC 3 cut(s) 169, 342, 721
SetI ASST 6 cut(s) 90, 184, 236, 274, 591, 838
SexAI ACCWGGT 1 cut(s) 835
SfaNI GCATC 3 cut(s) 235, 301, 836
SmiMI CAYNNNNRTG 1 cut(s) 699
Sse9I AATT 5 cut(s) 64, 158, 198, 328, 495
SsiI CCGC 1 cut(s) 443
SspMI CTAG 6 cut(s) 89, 204, 210, 287, 381, 744
StyD4I CCNGG 2 cut(s) 280, 835
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 2 cut(s) 467, 845
TasI AATT 5 cut(s) 64, 158, 198, 328, 495
TatI WGTACW 4 cut(s) 123, 320, 467, 818
TfiI GAWTC 3 cut(s) 386, 422, 674
Tru1I TTAA 2 cut(s) 512, 612
Tru9I TTAA 2 cut(s) 512, 612
TscAI CASTG 2 cut(s) 415, 522
TspDTI ATGAA 2 cut(s) 306, 645
TspRI CASTG 2 cut(s) 415, 522
XapI RAATTY 2 cut(s) 64, 158
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 1 cut(s) 299
XspI CTAG 6 cut(s) 89, 204, 210, 287, 381, 744
ZrmI AGTACT 1 cut(s) 125
Zsp2I ATGCAT 2 cut(s) 696, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.