Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022594.1

Orthogroup ID

OG0006233

Physical Location & Seq

Genomic Coordinates Forward (+)

1261 .. 3632

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggggattcaagggcttctccccttgttgaaatcgataatggagccaatccacattaaggacttgaagggctcttgtgtagccatcgatacctactcttggcttcacaaaggtgccctgtcctgcagcagagacctctgtaaaggcatacccacttccaggcacattgactactgcatgcatagagtgaatctgctgcggcattacggtgttaagcctatacttgtctttgatggcggtcttctaccgatgaagggtgaacaagagaacaaacgtgcaagggtgagaaaggaaaattttgcgcgtgctattgagcatgattccaatggcaattcttctgctgcttatgagtgctaccagaaagctgttgacatttcaccttctattgccctagagttaatccaggtgttgaaacaggagaatgtatgttatgttgtggctccatatgaggcagacgcacaaatgaccttcttggcagtcagcaaacaggtggaggcagtcatcactgaagactctgatctaataccatttggatgtcctagaattatctataaaatggacaaatttgggcaaggtgttgagtttcagtattcaaggctacctcggaacaaggacttgagctttgcagggttcacaaaacagatggttctggagatgtgtattcttagtggttgtgactatttgcagtcattgcctggaatgggacttaaaagggcacatgcactcattaaaaagttcacaagttatgataaggttattaagcacctgaagtacagtactgtttcagttcctcccctatatgaagaatcattcaagaaagcaatgatgactttccagcatcaacgggtttatgatcctgtttctcaagatattgtacatttgtctgatttgtctgttgatgttgaagaaaatttggacttcttaggaccatatcctttatatagaattaatataacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

319

Amino Acids

36.15

Weight (kDa)

7.99

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29630 AT1G29630 AT1G29630
fragaria_vesca	FvH4_3g06460 FvH4_3g06460 FvH4_3g06460 FvH4_3g06460 FvH4_3g06460
malus_domestica	MD10G1269500.v1.1
prunus_persica	Prupe.4G072200_v2.0.a1
pyrus_communis	pycom10g22570
rosa_chinensis	RchiOBHm_Chr5g0012821 RchiOBHm_Chr5g0012831
rosa_laevigata	RLG00000031958
rosa_multiflora	Rmu_sc0002365.1_g000036 Rmu_sc0022594.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063780
rosa_rugosa	Rorug05G0004500 Rorug05G0004500
rosa_samantha	Rh5AG098300 Rh5AG098400 Rh5BG095200 Rh5CG107200 Rh5CG107300 Rh5DG093900 Rh5DG094000
rosa_wichuraiana	Rw5G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	1 cut(s)	304
AciI	CCGC	2 cut(s)	199, 237
AclWI	GGATC	1 cut(s)	848
AcsI	RAATTY	3 cut(s)	295, 563, 910
AcuI	CTGAAG	2 cut(s)	528, 788
AfaI	GTAC	3 cut(s)	773, 778, 876
AfiI	CCNNNNNNNGG	5 cut(s)	58, 99, 159, 254, 701
AgsI	TTSAA	7 cut(s)	11, 31, 67, 412, 594, 814, 905
AjnI	CCWGG	3 cut(s)	158, 402, 694
AleI	CACNNNNGTG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	365, 621
AluI	AGCT	2 cut(s)	365, 621
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	848
ApeKI	GCWGC	3 cut(s)	126, 196, 341
ApoI	RAATTY	3 cut(s)	295, 563, 910
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AseI	ATTAAT	1 cut(s)	948
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	926
AsuHPI	GGTGA	3 cut(s)	269, 295, 369
AvaII	GGWCC	1 cut(s)	926
BaeGI	GKGCMC	2 cut(s)	118, 718
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	2 cut(s)	233, 516
BbvI	GCAGC	3 cut(s)	138, 183, 328
BccI	CCATC	3 cut(s)	92, 227, 637
BciT130I	CCWGG	3 cut(s)	160, 404, 696
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	392, 540
BfmI	CTRYAG	1 cut(s)	124
BisI	GCNGC	4 cut(s)	127, 197, 200, 342
BlsI	GCNGC	4 cut(s)	128, 198, 201, 343
BmcAI	AGTACT	1 cut(s)	778
Bme1390I	CCNGG	3 cut(s)	160, 404, 696
Bme18I	GGWCC	1 cut(s)	926
BmgT120I	GGNCC	1 cut(s)	926
BmiI	GGNNCC	3 cut(s)	45, 115, 441
BmrFI	CCNGG	3 cut(s)	160, 404, 696
BmsI	GCATC	1 cut(s)	847
BpiI	GAAGAC	2 cut(s)	233, 516
BpmI	CTGGAG	1 cut(s)	671
BpuEI	CTTGAG	2 cut(s)	637, 849
Bsa29I	ATCGAT	2 cut(s)	35, 87
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 99, 159, 254, 701
Bse3DI	GCAATG	2 cut(s)	689, 828
BseBI	CCWGG	3 cut(s)	160, 404, 696
BseCI	ATCGAT	2 cut(s)	35, 87
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	5 cut(s)	58, 99, 159, 254, 701
BseMI	GCAATG	2 cut(s)	689, 828
BseSI	GKGCMC	2 cut(s)	118, 718
BseXI	GCAGC	3 cut(s)	138, 183, 328
Bsh1236I	CGCG	1 cut(s)	304
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	2 cut(s)	35, 87
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	5 cut(s)	58, 99, 159, 254, 701
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	717
Bso31I	GGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	3 cut(s)	74, 118, 718
Bsp1407I	TGTACA	1 cut(s)	874
Bsp143I	GATC	2 cut(s)	517, 853
BspACI	CCGC	2 cut(s)	199, 237
BspDI	ATCGAT	2 cut(s)	35, 87
BspFNI	CGCG	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	45, 115, 441
BspMAI	CTGCAG	1 cut(s)	128
BspPI	GGATC	1 cut(s)	848
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	126
BsrDI	GCAATG	2 cut(s)	689, 828
BsrGI	TGTACA	1 cut(s)	874
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	2 cut(s)	517, 853
Bst2UI	CCWGG	3 cut(s)	160, 404, 696
Bst4CI	ACNGT	3 cut(s)	209, 776, 781
BstAPI	GCANNNNNTGC	1 cut(s)	691
BstAUI	TGTACA	1 cut(s)	874
BstC8I	GCNNGC	2 cut(s)	179, 306
BstDEI	CTNAG	2 cut(s)	665, 922
BstF5I	GGATG	1 cut(s)	539
BstFNI	CGCG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	520, 856
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	517, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	691
BstNI	CCWGG	3 cut(s)	160, 404, 696
BstNSI	RCATGY	2 cut(s)	181, 722
BstSCI	CCNGG	3 cut(s)	158, 402, 694
BstSFI	CTRYAG	1 cut(s)	124
BstSLI	GKGCMC	2 cut(s)	118, 718
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	138, 183, 328
BstV2I	GAAGAC	2 cut(s)	233, 516
Bsu15I	ATCGAT	2 cut(s)	35, 87
BsuTUI	ATCGAT	2 cut(s)	35, 87
BtsCI	GGATG	1 cut(s)	539
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	2 cut(s)	179, 306
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	926
ClaI	ATCGAT	2 cut(s)	35, 87
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	772, 777, 875
CviAII	CATG	3 cut(s)	178, 317, 719
CviQI	GTAC	3 cut(s)	772, 777, 875
DdeI	CTNAG	2 cut(s)	665, 922
DpnI	GATC	2 cut(s)	519, 855
DpnII	GATC	2 cut(s)	517, 853
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	926
Eco57I	CTGAAG	2 cut(s)	528, 788
EcoRII	CCWGG	3 cut(s)	158, 402, 694
EcoT22I	ATGCAT	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	3 cut(s)	181, 320, 722
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	3 cut(s)	177, 316, 718
FauNDI	CATATG	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	127, 197, 200, 342
FokI	GGATG	1 cut(s)	546
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	4 cut(s)	127, 197, 200, 342
FspBI	CTAG	2 cut(s)	392, 540
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	4 cut(s)	127, 197, 200, 342
GsuI	CTGGAG	1 cut(s)	671
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	181, 320, 722
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	5 cut(s)	7, 190, 320, 512, 806
HphI	GGTGA	3 cut(s)	269, 295, 369
Hpy166II	GTNNAC	4 cut(s)	260, 370, 633, 738
Hpy188I	TCNGA	3 cut(s)	517, 606, 886
Hpy188III	TCNNGA	3 cut(s)	650, 814, 866
Hpy8I	GTNNAC	4 cut(s)	260, 370, 633, 738
HpyAV	CCTTC	4 cut(s)	61, 247, 390, 478
HpyCH4III	ACNGT	3 cut(s)	209, 776, 781
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	7 cut(s)	126, 177, 181, 278, 626, 685, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	691
HpyF3I	CTNAG	2 cut(s)	665, 922
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	3 cut(s)	181, 320, 722
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	517, 853
LmnI	GCTCC	2 cut(s)	43, 445
Lsp1109I	GCAGC	3 cut(s)	138, 183, 328
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	2 cut(s)	392, 540
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	2 cut(s)	519, 855
MboI	GATC	2 cut(s)	517, 853
MboII	GAAGA	5 cut(s)	233, 327, 521, 815, 917
MhlI	GDGCHC	3 cut(s)	74, 118, 718
MluCI	AATT	6 cut(s)	295, 331, 543, 563, 910, 945
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	5 cut(s)	146, 442, 487, 612, 801
Mph1103I	ATGCAT	1 cut(s)	183
MseI	TTAA	8 cut(s)	57, 213, 398, 708, 729, 759, 948, 958
MslI	CAYNNNNRTG	3 cut(s)	111, 207, 532
MspR9I	CCNGG	3 cut(s)	160, 404, 696
MvaI	CCWGG	3 cut(s)	160, 404, 696
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	691
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	2 cut(s)	517, 853
NlaIII	CATG	3 cut(s)	181, 320, 722
NlaIV	GGNNCC	3 cut(s)	45, 115, 441
NmuCI	GTSAC	1 cut(s)	674
NsiI	ATGCAT	1 cut(s)	183
NspI	RCATGY	2 cut(s)	181, 722
OliI	CACNNNNGTG	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	181
PfeI	GAWTC	4 cut(s)	7, 190, 320, 806
PkrI	GCNGC	4 cut(s)	128, 198, 201, 343
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PshBI	ATTAAT	1 cut(s)	948
Psp6I	CCWGG	3 cut(s)	158, 402, 694
PspGI	CCWGG	3 cut(s)	158, 402, 694
PspN4I	GGNNCC	3 cut(s)	45, 115, 441
PspPI	GGNCC	1 cut(s)	926
PstI	CTGCAG	1 cut(s)	128
RsaI	GTAC	3 cut(s)	773, 778, 876
RsaNI	GTAC	3 cut(s)	772, 777, 875
RseI	CAYNNNNRTG	3 cut(s)	111, 207, 532
SaqAI	TTAA	8 cut(s)	57, 213, 398, 708, 729, 759, 948, 958
SatI	GCNGC	4 cut(s)	127, 197, 200, 342
Sau3AI	GATC	2 cut(s)	517, 853
Sau96I	GGNCC	1 cut(s)	926
ScaI	AGTACT	1 cut(s)	778
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	160, 404, 696
SduI	GDGCHC	3 cut(s)	74, 118, 718
SfaNI	GCATC	1 cut(s)	847
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	926
SmiMI	CAYNNNNRTG	3 cut(s)	111, 207, 532
SmlI	CTYRAG	2 cut(s)	616, 864
SmoI	CTYRAG	2 cut(s)	616, 864
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	6 cut(s)	295, 331, 543, 563, 910, 945
SsiI	CCGC	2 cut(s)	199, 237
SspMI	CTAG	2 cut(s)	392, 540
StyD4I	CCNGG	3 cut(s)	158, 402, 694
TaaI	ACNGT	3 cut(s)	209, 776, 781
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	2 cut(s)	35, 87
TasI	AATT	6 cut(s)	295, 331, 543, 563, 910, 945
TatI	WGTACW	3 cut(s)	771, 776, 874
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	4 cut(s)	7, 190, 320, 806
Tru1I	TTAA	8 cut(s)	57, 213, 398, 708, 729, 759, 948, 958
Tru9I	TTAA	8 cut(s)	57, 213, 398, 708, 729, 759, 948, 958
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	3 cut(s)	126, 196, 341
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	2 cut(s)	266, 816
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	926
VspI	ATTAAT	1 cut(s)	948
XapI	RAATTY	3 cut(s)	295, 563, 910
XceI	RCATGY	2 cut(s)	181, 722
XspI	CTAG	2 cut(s)	392, 540
ZrmI	AGTACT	1 cut(s)	778
Zsp2I	ATGCAT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.