Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006233

Physical Location & Seq

Genomic Coordinates Forward (+)

8621487 .. 8624773

Gene Structure 3287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG094000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCCATTCCAGCAACAGGAAGAGAAGATTAGTGCCAACACAAGTTCCCAACCCAAAAATGTGAATTTTGGATATACAAAGAAAAAGCTAGATTTGCCTGTGCAGAATAATCTTCTGACAAAGTACTTTTGCTTTGCTTCTCTTGAAGCAAAGAGAAAATTCAGGGCACCACGATCATCACCTGATGATCCAAGTCCAATTTCTAGTTCTAGTCTCAGCCCAGATGAGAATACCTCTGTGGATGATGCTTTTGGTAAAACCAACTTCTCAGGTTCTTCTCCCAGTCTAGATGAACATGTCTCTGTGGATGATGCCGTTTGTACAACAAATTACTCAGGGCCCATTCTGCTTGACCCTGAAAACATTGGAAATACGCCTCCTAGTGATTCAGTAGAAGATGGTTTTCCCACTGATTTATCAGAATCTCCAAATGATGATATGGCGGGCAAGACAAGAAGTCCAGACAGTACATTGTTACAACAACCCATACATTCAATTCACAAACCCTGTTTAACACTGCATAGGGAGCGTGAATGTAAGAATGCCCAAGGCACATTTGAGGGTAAAACAAGGACAGAGAACAGAAAGGTCATTGTAAGAAGTCCTTATTTTAAGGAGAAATCAAACAATGAAAATAAGCAGGAAGATAAACAAGAAAAAATCTTGTTGAAGGATTCTCTTGGCAATAATATGCATGATAATGCAGATCCTGAGAGTGCCCCTTTCGGGAATAGTCATTTCCCTAGAAAACTTGTGAAAAGGAAAAACTCCCCAAATGACAGCGTTCAAGAGGACGATGGGAAACCCAAACAAATGTGTACTAATGCATCACTACCTGGTAACGGTCCCTCTGCTTCCAGCCATGAAGCAACATTTAAGGACACAAAAACTGAAGAAGGAAGATTTGGATCCAACATTTCCCATTTGGGTCGTTACTCTGATATAGCAGAGAAGTCGATGGAAAATTTTGTTTCAGTAATATCATCATTTAGATTTGGCTCATCTGGTTCTCGTGCAAGTGGCCTCCGTGCTCCTCTGAAAGATGTTCGAAATACTTGTACCAATAGGACAACTGTTGGTGCTGACTTTAGCCAATTTGAATATGCAACTCTGCTTGATTCTTCGAAGACCAATTTTGGAGTTCATGAGACTGGTCTTAAACCTCTGGGAATTCATGTTAACAACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

396

Amino Acids

43.55

Weight (kDa)

6.23

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29630 AT1G29630 AT1G29630
fragaria_vesca	FvH4_3g06460 FvH4_3g06460 FvH4_3g06460 FvH4_3g06460 FvH4_3g06460
malus_domestica	MD10G1269500.v1.1
prunus_persica	Prupe.4G072200_v2.0.a1
pyrus_communis	pycom10g22570
rosa_chinensis	RchiOBHm_Chr5g0012821 RchiOBHm_Chr5g0012831
rosa_laevigata	RLG00000031958
rosa_multiflora	Rmu_sc0002365.1_g000036 Rmu_sc0022594.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063780
rosa_rugosa	Rorug05G0004500 Rorug05G0004500
rosa_samantha	Rh5AG098300 Rh5AG098400 Rh5BG095200 Rh5CG107200 Rh5CG107300 Rh5DG093900 Rh5DG094000
rosa_wichuraiana	Rw5G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	4 cut(s)	182, 701, 903, 916
AcsI	RAATTY	4 cut(s)	64, 158, 964, 1170
AcuI	CTGAAG	1 cut(s)	912
AfaI	GTAC	5 cut(s)	125, 322, 469, 820, 1060
AfiI	CCNNNNNNNGG	3 cut(s)	16, 726, 842
AflIII	ACRYGT	2 cut(s)	295, 1185
AgsI	TTSAA	5 cut(s)	146, 495, 670, 788, 1100
AhdI	GACNNNNNGTC	1 cut(s)	456
AjnI	CCWGG	1 cut(s)	835
AjuI	GAANNNNNNNTTGG	6 cut(s)	184, 190, 216, 222, 888, 920
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	1033
Alw26I	GTCTC	3 cut(s)	218, 304, 1142
AlwI	GGATC	4 cut(s)	182, 701, 903, 916
AlwNI	CAGNNNCTG	1 cut(s)	710
AoxI	GGCC	2 cut(s)	338, 1021
ApaI	GGGCCC	1 cut(s)	342
ApoI	RAATTY	4 cut(s)	64, 158, 964, 1170
AspS9I	GGNCC	3 cut(s)	338, 339, 845
AsuHPI	GGTGA	1 cut(s)	171
AsuII	TTCGAA	2 cut(s)	1048, 1124
AvaII	GGWCC	1 cut(s)	845
BaeGI	GKGCMC	3 cut(s)	169, 342, 721
BamHI	GGATCC	1 cut(s)	908
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	342
BauI	CACGAG	1 cut(s)	1011
BbsI	GAAGAC	1 cut(s)	1133
Bbv12I	GWGCWC	1 cut(s)	1033
BccI	CCATC	3 cut(s)	392, 791, 952
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	936, 970
BciT130I	CCWGG	1 cut(s)	837
BcoDI	GTCTC	3 cut(s)	218, 304, 1142
BfaI	CTAG	6 cut(s)	89, 204, 210, 287, 381, 744
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	837
Bme18I	GGWCC	1 cut(s)	845
BmeRI	GACNNNNNGTC	1 cut(s)	456
BmgT120I	GGNCC	3 cut(s)	338, 339, 845
BmiI	GGNNCC	4 cut(s)	168, 340, 847, 910
BmrFI	CCNGG	1 cut(s)	837
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	3 cut(s)	235, 301, 836
BmuI	ACTGGG	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	1133
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
Bpu14I	TTCGAA	2 cut(s)	1048, 1124
BsaAI	YACGTR	1 cut(s)	1188
BsaBI	GATNNNNATC	1 cut(s)	907
BsaJI	CCNNGG	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 726, 842
Bse1I	ACTGG	2 cut(s)	282, 1156
Bse8I	GATNNNNATC	1 cut(s)	907
BseBI	CCWGG	1 cut(s)	837
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	2 cut(s)	247, 313
BseJI	GATNNNNATC	1 cut(s)	907
BseLI	CCNNNNNNNGG	3 cut(s)	16, 726, 842
BseMII	CTCAG	4 cut(s)	229, 282, 348, 702
BseNI	ACTGG	2 cut(s)	282, 1156
BseRI	GAGGAG	1 cut(s)	1023
BseSI	GKGCMC	3 cut(s)	169, 342, 721
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	340, 1023
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	1033
BslFI	GGGAC	1 cut(s)	831
BslI	CCNNNNNNNGG	3 cut(s)	16, 726, 842
BsmAI	GTCTC	3 cut(s)	218, 304, 1142
BsmFI	GGGAC	1 cut(s)	831
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	2 cut(s)	340, 1023
Bsp119I	TTCGAA	2 cut(s)	1048, 1124
Bsp120I	GGGCCC	1 cut(s)	338
Bsp1286I	GDGCHC	4 cut(s)	169, 342, 721, 1033
Bsp1407I	TGTACA	1 cut(s)	320
Bsp143I	GATC	4 cut(s)	173, 187, 706, 908
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	2 cut(s)	340, 1023
BspCNI	CTCAG	4 cut(s)	228, 281, 347, 703
BspHI	TCATGA	1 cut(s)	1144
BspLI	GGNNCC	4 cut(s)	168, 340, 847, 910
BspPI	GGATC	4 cut(s)	182, 701, 903, 916
BspT104I	TTCGAA	2 cut(s)	1048, 1124
BspT107I	GGYRCC	1 cut(s)	166
BsrGI	TGTACA	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	282, 1156
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	4 cut(s)	173, 187, 706, 908
BssSI	CACGAG	1 cut(s)	1011
BssT1I	CCWWGG	1 cut(s)	547
Bst2BI	CACGAG	1 cut(s)	1011
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	3 cut(s)	467, 845, 1075
Bst6I	CTCTTC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	320
BstBAI	YACGTR	1 cut(s)	1188
BstBI	TTCGAA	2 cut(s)	1048, 1124
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	4 cut(s)	215, 268, 334, 711
BstF5I	GGATG	2 cut(s)	247, 313
BstKTI	GATC	4 cut(s)	176, 190, 709, 911
BstMAI	GTCTC	3 cut(s)	218, 304, 1142
BstMBI	GATC	4 cut(s)	173, 187, 706, 908
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 94, 346, 526
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	835
BstSLI	GKGCMC	3 cut(s)	169, 342, 721
BstV2I	GAAGAC	1 cut(s)	1133
BstX2I	RGATCY	2 cut(s)	706, 908
BstYI	RGATCY	2 cut(s)	706, 908
BsuRI	GGCC	2 cut(s)	340, 1023
BtsCI	GGATG	2 cut(s)	247, 313
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	2 cut(s)	408, 515
Cac8I	GCNNGC	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	710
CciI	TCATGA	1 cut(s)	1144
Cfr13I	GGNCC	3 cut(s)	338, 339, 845
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	5 cut(s)	124, 321, 468, 819, 1059
CviAII	CATG	5 cut(s)	296, 695, 863, 1145, 1175
CviJI	RGCY	7 cut(s)	88, 219, 340, 861, 999, 1023, 1092
CviKI_1	RGCY	7 cut(s)	88, 219, 340, 861, 999, 1023, 1092
CviQI	GTAC	5 cut(s)	124, 321, 468, 819, 1059
DdeI	CTNAG	4 cut(s)	215, 268, 334, 711
DpnI	GATC	4 cut(s)	175, 189, 708, 910
DpnII	GATC	4 cut(s)	173, 187, 706, 908
DriI	GACNNNNNGTC	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	15
Eam1105I	GACNNNNNGTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	845
Eco57I	CTGAAG	1 cut(s)	912
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	1170
EcoRII	CCWGG	1 cut(s)	835
EcoT14I	CCWWGG	1 cut(s)	547
EcoT22I	ATGCAT	2 cut(s)	696, 829
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	5 cut(s)	299, 698, 866, 1148, 1178
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FaqI	GGGAC	1 cut(s)	831
FatI	CATG	5 cut(s)	295, 694, 862, 1144, 1174
FauI	CCCGC	1 cut(s)	436
FokI	GGATG	2 cut(s)	254, 320
FriOI	GRGCYC	1 cut(s)	342
FspBI	CTAG	6 cut(s)	89, 204, 210, 287, 381, 744
HaeIII	GGCC	2 cut(s)	340, 1023
Hin1II	CATG	5 cut(s)	299, 698, 866, 1148, 1178
HincII	GTYRAC	1 cut(s)	1180
HindII	GTYRAC	1 cut(s)	1180
HinfI	GANTC	4 cut(s)	386, 422, 674, 1118
HpaI	GTTAAC	1 cut(s)	1180
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	2 cut(s)	819, 1180
Hpy188I	TCNGA	4 cut(s)	117, 421, 940, 1038
Hpy188III	TCNNGA	7 cut(s)	143, 287, 461, 710, 727, 788, 1145
Hpy8I	GTNNAC	2 cut(s)	819, 1180
HpyAV	CCTTC	2 cut(s)	664, 890
HpyCH4III	ACNGT	3 cut(s)	467, 845, 1075
HpyCH4IV	ACGT	1 cut(s)	1187
HpyCH4V	TGCA	7 cut(s)	103, 520, 694, 704, 827, 1016, 1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 94, 346, 526
HpyF3I	CTNAG	4 cut(s)	215, 268, 334, 711
HpySE526I	ACGT	1 cut(s)	1187
Hsp92II	CATG	5 cut(s)	299, 698, 866, 1148, 1178
KspAI	GTTAAC	1 cut(s)	1180
Kzo9I	GATC	4 cut(s)	173, 187, 706, 908
LmnI	GCTCC	2 cut(s)	526, 1036
LweI	GCATC	3 cut(s)	235, 301, 836
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	6 cut(s)	89, 204, 210, 287, 381, 744
MaeII	ACGT	1 cut(s)	1187
MaeIII	GTNAC	3 cut(s)	474, 839, 932
MalI	GATC	4 cut(s)	175, 189, 708, 910
MboI	GATC	4 cut(s)	173, 187, 706, 908
MflI	RGATCY	2 cut(s)	706, 908
MhlI	GDGCHC	4 cut(s)	169, 342, 721, 1033
MluCI	AATT	9 cut(s)	64, 158, 198, 328, 495, 964, 1094, 1132, 1170
MmeI	TCCRAC	1 cut(s)	936
MnlI	CCTC	8 cut(s)	244, 387, 553, 784, 859, 1034, 1044, 1173
Mph1103I	ATGCAT	2 cut(s)	696, 829
MseI	TTAA	5 cut(s)	512, 612, 876, 1158, 1179
MslI	CAYNNNNRTG	1 cut(s)	699
MspR9I	CCNGG	1 cut(s)	837
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	837
MwoI	GCNNNNNNNGC	4 cut(s)	10, 94, 346, 526
NdeII	GATC	4 cut(s)	173, 187, 706, 908
NlaIII	CATG	5 cut(s)	299, 698, 866, 1148, 1178
NlaIV	GGNNCC	4 cut(s)	168, 340, 847, 910
NsiI	ATGCAT	2 cut(s)	696, 829
NspI	RCATGY	1 cut(s)	299
NspV	TTCGAA	2 cut(s)	1048, 1124
PagI	TCATGA	1 cut(s)	1144
PciI	ACATGT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	4 cut(s)	386, 422, 674, 1118
Ppu21I	YACGTR	1 cut(s)	1188
PscI	ACATGT	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	835
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	4 cut(s)	168, 340, 847, 910
PspOMI	GGGCCC	1 cut(s)	338
PspPI	GGNCC	3 cut(s)	338, 339, 845
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	2 cut(s)	706, 908
RsaI	GTAC	5 cut(s)	125, 322, 469, 820, 1060
RsaNI	GTAC	5 cut(s)	124, 321, 468, 819, 1059
RseI	CAYNNNNRTG	1 cut(s)	699
SaqAI	TTAA	5 cut(s)	512, 612, 876, 1158, 1179
Sau3AI	GATC	4 cut(s)	173, 187, 706, 908
Sau96I	GGNCC	3 cut(s)	338, 339, 845
ScaI	AGTACT	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	837
SduI	GDGCHC	4 cut(s)	169, 342, 721, 1033
SetI	ASST	8 cut(s)	90, 184, 236, 274, 591, 838, 1165, 1190
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	3 cut(s)	235, 301, 836
SfuI	TTCGAA	2 cut(s)	1048, 1124
SinI	GGWCC	1 cut(s)	845
SmiMI	CAYNNNNRTG	1 cut(s)	699
Sse9I	AATT	9 cut(s)	64, 158, 198, 328, 495, 964, 1094, 1132, 1170
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	6 cut(s)	89, 204, 210, 287, 381, 744
StyD4I	CCNGG	1 cut(s)	835
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	3 cut(s)	467, 845, 1075
TaiI	ACGT	1 cut(s)	1190
TaqI	TCGA	3 cut(s)	956, 1048, 1124
TasI	AATT	9 cut(s)	64, 158, 198, 328, 495, 964, 1094, 1132, 1170
TatI	WGTACW	4 cut(s)	123, 320, 467, 818
TfiI	GAWTC	4 cut(s)	386, 422, 674, 1118
Tru1I	TTAA	5 cut(s)	512, 612, 876, 1158, 1179
Tru9I	TTAA	5 cut(s)	512, 612, 876, 1158, 1179
TscAI	CASTG	2 cut(s)	415, 522
TspDTI	ATGAA	5 cut(s)	306, 645, 879, 1133, 1163
TspGWI	ACGGA	1 cut(s)	1016
TspRI	CASTG	2 cut(s)	415, 522
VpaK11BI	GGWCC	1 cut(s)	845
XapI	RAATTY	4 cut(s)	64, 158, 964, 1170
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	6 cut(s)	89, 204, 210, 287, 381, 744
ZrmI	AGTACT	1 cut(s)	125
Zsp2I	ATGCAT	2 cut(s)	696, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.