Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Forward (+)

298922 .. 301562

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0004500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGGAAGCTACTGAGGGGTAGGGATGATGAGTATGGAGGTGTGATCGTCCACCTCCACATGGATGATGAGGCTATGGACTCTGCCACTTTCATTTCATCTCTTACCTCTTCAGTTGCGGTTTGGAAGCTCCAGGGGAAGAAGGGTGTTTGGCTCAGATTGCCTATACAACGAGCCAACCTTGTTGAAGCTGCAGTCCAGCAAGGATTCTGGTACCACCATGCGGAGCCTCATTATTTGATGCTCGTCTATTGGCTTCCCAAGTCTGCTCATACTCTTCCTGAAAATGCCACACACCGACTCGGAATTGGTGCTTTTCTAATCAATCAAAACAGAGAGGTGTTAGTAGTCCAAGAAAAGGGAGGACAGTATGGTGGGACAGGCGTGTGGAAGCTCCCTACTGGAGCTGTCGATGAGGGGGAAGATATCTATGCAGCAGCTGTGAGAGAAGTTAAAGAAGAAACAGGAATTGACTCAGAGTTTATAGAAATTCTAGCATTCAGACAGATCCACAAGTCGTTTCAGAAATCGGATTTGTTTTTTCTGTGCATGTTGCGACCCCTCTCCTTTGACATCCAGAAGCAGGAACAAGAGATAGAAGCAGCCAAGTGGATGCCATTTGAGGAATATGCAGCTCAACCATATGCCCAGAAATATGAGTTTCTGATGTACCTCCATGACATATGCAAAGCAAAGATTGATGGGAACTATACTGGATTTTCTCCAATACCTACAACTAGTTATTCTGTTCAGAAGAGCTACTTGTACTTGAATGGTACCGAAGCACCCAAGAGATATAGTAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

269

Amino Acids

30.69

Weight (kDa)

6.0

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	5 - 86	6.6e-29	Nudix hydrolase domain
NUDIX	PF00293	99 - 217	1.3e-25	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	213, 776
AccB1I	GGYRCC	2 cut(s)	213, 776
AciI	CCGC	2 cut(s)	119, 224
AclWI	GGATC	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	4 cut(s)	215, 671, 767, 778
AfiI	CCNNNNNNNGG	4 cut(s)	61, 223, 358, 583
AgsI	TTSAA	2 cut(s)	188, 772
AhlI	ACTAGT	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	8 cut(s)	10, 130, 191, 394, 407, 440, 635, 759
AluI	AGCT	8 cut(s)	10, 130, 191, 394, 407, 440, 635, 759
AlwI	GGATC	1 cut(s)	502
AlwNI	CAGNNNCTG	1 cut(s)	440
ApeKI	GCWGC	5 cut(s)	191, 434, 437, 602, 632
ApoI	RAATTY	1 cut(s)	489
Asp718I	GGTACC	2 cut(s)	213, 776
BanI	GGYRCC	2 cut(s)	213, 776
BbvI	GCAGC	5 cut(s)	178, 446, 449, 614, 644
BccI	CCATC	1 cut(s)	695
BciT130I	CCWGG	1 cut(s)	134
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	2 cut(s)	494, 738
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	5 cut(s)	192, 435, 438, 603, 633
BlsI	GCNGC	5 cut(s)	193, 436, 439, 604, 634
Bme1390I	CCNGG	1 cut(s)	134
BmiI	GGNNCC	3 cut(s)	215, 228, 778
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	231, 603
BpmI	CTGGAG	2 cut(s)	116, 423
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 223, 358, 583
Bse1I	ACTGG	2 cut(s)	406, 718
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	4 cut(s)	31, 70, 573, 618
BseLI	CCNNNNNNNGG	4 cut(s)	61, 223, 358, 583
BseMII	CTCAG	3 cut(s)	5, 169, 489
BseNI	ACTGG	2 cut(s)	406, 718
BseXI	GCAGC	5 cut(s)	178, 446, 449, 614, 644
BshNI	GGYRCC	2 cut(s)	213, 776
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	4 cut(s)	61, 223, 358, 583
BsmFI	GGGAC	1 cut(s)	391
BsmI	GAATGC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	45, 507
BspACI	CCGC	2 cut(s)	119, 224
BspCNI	CTCAG	3 cut(s)	6, 168, 488
BspLI	GGNNCC	3 cut(s)	215, 228, 778
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	502
BspQI	GCTCTTC	1 cut(s)	749
BspT107I	GGYRCC	2 cut(s)	213, 776
BsrI	ACTGG	2 cut(s)	406, 718
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	45, 507
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	3 cut(s)	115, 282, 749
BstDEI	CTNAG	3 cut(s)	14, 155, 475
BstF5I	GGATG	4 cut(s)	31, 70, 573, 618
BstKTI	GATC	2 cut(s)	48, 510
BstMBI	GATC	2 cut(s)	45, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	5 cut(s)	178, 446, 449, 614, 644
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BtsCI	GGATG	4 cut(s)	31, 70, 573, 618
CaiI	CAGNNNCTG	1 cut(s)	440
Csp6I	GTAC	4 cut(s)	214, 670, 766, 777
CviAII	CATG	4 cut(s)	61, 221, 550, 677
CviQI	GTAC	4 cut(s)	214, 670, 766, 777
DdeI	CTNAG	3 cut(s)	14, 155, 475
DpnI	GATC	2 cut(s)	47, 509
DpnII	GATC	2 cut(s)	45, 507
Eam1104I	CTCTTC	3 cut(s)	115, 282, 749
EarI	CTCTTC	3 cut(s)	115, 282, 749
Eco32I	GATATC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	427
FaeI	CATG	4 cut(s)	64, 224, 553, 680
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	4 cut(s)	60, 220, 549, 676
FauNDI	CATATG	2 cut(s)	643, 683
Fnu4HI	GCNGC	5 cut(s)	192, 435, 438, 603, 633
FokI	GGATG	4 cut(s)	38, 77, 560, 625
Fsp4HI	GCNGC	5 cut(s)	192, 435, 438, 603, 633
FspBI	CTAG	2 cut(s)	494, 738
GluI	GCNGC	5 cut(s)	192, 435, 438, 603, 633
GsuI	CTGGAG	2 cut(s)	116, 423
Hin1II	CATG	4 cut(s)	64, 224, 553, 680
HinfI	GANTC	4 cut(s)	80, 207, 300, 473
Hpy166II	GTNNAC	2 cut(s)	52, 803
Hpy188I	TCNGA	9 cut(s)	158, 305, 478, 503, 525, 532, 666, 753, 809
Hpy188III	TCNNGA	2 cut(s)	281, 577
Hpy8I	GTNNAC	2 cut(s)	52, 803
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4V	TGCA	5 cut(s)	194, 434, 549, 632, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	3 cut(s)	14, 155, 475
Hsp92II	CATG	4 cut(s)	64, 224, 553, 680
KpnI	GGTACC	2 cut(s)	217, 780
Kzo9I	GATC	2 cut(s)	45, 507
LguI	GCTCTTC	1 cut(s)	749
LmnI	GCTCC	4 cut(s)	135, 226, 399, 404
Lsp1109I	GCAGC	5 cut(s)	178, 446, 449, 614, 644
LweI	GCATC	2 cut(s)	231, 603
MaeI	CTAG	2 cut(s)	494, 738
MalI	GATC	2 cut(s)	47, 509
MboI	GATC	2 cut(s)	45, 507
MboII	GAAGA	6 cut(s)	102, 151, 269, 434, 470, 766
MflI	RGATCY	1 cut(s)	507
MluCI	AATT	3 cut(s)	306, 468, 489
MlyI	GAGTC	3 cut(s)	74, 294, 467
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeI	CATATG	2 cut(s)	643, 683
NdeII	GATC	2 cut(s)	45, 507
NlaIII	CATG	4 cut(s)	64, 224, 553, 680
NlaIV	GGNNCC	3 cut(s)	215, 228, 778
NspI	RCATGY	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	749
PctI	GAATGC	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	5 cut(s)	193, 436, 439, 604, 634
PleI	GAGTC	3 cut(s)	74, 294, 467
PpsI	GAGTC	3 cut(s)	74, 294, 467
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	215, 228, 778
PstI	CTGCAG	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	4 cut(s)	215, 671, 767, 778
RsaNI	GTAC	4 cut(s)	214, 670, 766, 777
RseI	CAYNNNNRTG	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	749
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	5 cut(s)	192, 435, 438, 603, 633
Sau3AI	GATC	2 cut(s)	45, 507
SchI	GAGTC	3 cut(s)	74, 294, 467
ScrFI	CCNGG	1 cut(s)	134
SfaNI	GCATC	2 cut(s)	231, 603
SfcI	CTRYAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	63
SpeI	ACTAGT	1 cut(s)	737
Sse9I	AATT	3 cut(s)	306, 468, 489
SsiI	CCGC	2 cut(s)	119, 224
SspMI	CTAG	2 cut(s)	494, 738
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	411
TasI	AATT	3 cut(s)	306, 468, 489
TatI	WGTACW	1 cut(s)	765
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TseI	GCWGC	5 cut(s)	191, 434, 437, 602, 632
TspDTI	ATGAA	2 cut(s)	82, 87
XapI	RAATTY	1 cut(s)	489
XceI	RCATGY	1 cut(s)	553
XspI	CTAG	2 cut(s)	494, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.