Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

28063199 .. 28064717

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTGCCGACTGGACTGTTTTCTGTTTATTTAGGTTGGAGTACTGCAGCCGGCATTGCAGGGAATATCTTTGCCTTTGTGTTATTTGTGTCACCAATACCAACATTTAAGAGAATTGTCAAAACTAAGTCAACGGAACAATTTTCCGGATTGCCTTACATATATGCACTTTTGAACTGCTTGATATGCTCCTGGTATGGAATGCCTGCTGTGAAAACTGGGATTATACTGGTGGCTACAGTCAATTCAATCGGGGCGGTTTTCCAGTTAGTCTACTTAAGCATTTTCATTAGGCACGCCAAAAGAGCAATCAAGCTGAGGATGATGGGATTAATAGCGGCAGTTATTGTTGTGTTCGCGTTCGTTGTCTTTGTGAGCTTGGGGCTTTTAGACTACGATAAGAGGCAAACGTTTGTCGGATACCTGAGTGTTGCTTCACTCATCTCAATGTTTGCTTCGCCGCTGTTCATCATAAAATTGGTGATCAAAACAAGGAGTGTCGAGTTCATGCCATTTAATCTTTCTCTCGCGACGTTTTTGATGAGTCTCTCTTTCTCTGCATATGGAGTGCTCAAGGAAGACCCTTTCCTCTATATCCCAAACGGTATTGGAACAATTTTAGGGCTTGTCCAGTTAGCTCTGTACTCCTACTACAGCAAAATATCCGAAGACGCCTCAAGAGAGCCGTTGATAGTTTCATACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

25.92

Weight (kDa)

9.56

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 101	6.5e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 220	9.1e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	2 cut(s)	359, 530
AccIII	TCCGGA	1 cut(s)	146
AciI	CCGC	3 cut(s)	257, 338, 461
AclI	AACGTT	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	2 cut(s)	43, 644
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	175, 249
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	3 cut(s)	316, 378, 638
AluI	AGCT	3 cut(s)	316, 378, 638
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	47
AseI	ATTAAT	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	84, 493
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BbsI	GAAGAC	2 cut(s)	585, 675
Bbv12I	GWGCWC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	670
BciT130I	CCWGG	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	413
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	551
BfmI	CTRYAG	3 cut(s)	45, 237, 652
BfrI	CTTAAG	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	48, 339, 461
BlsI	GCNGC	3 cut(s)	49, 340, 462
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	193
BmrI	ACTGGG	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	585, 675
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	557, 661
BsaHI	GRCGYC	1 cut(s)	672
BsaWI	WCCGGW	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	5 cut(s)	16, 223, 234, 265, 631
Bse3DI	GCAATG	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	308, 416
BseNI	ACTGG	5 cut(s)	16, 223, 234, 265, 631
BseXI	GCAGC	1 cut(s)	59
Bsh1236I	CGCG	2 cut(s)	359, 530
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	2 cut(s)	51, 147
BsmAI	GTCTC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	483
Bsp68I	TCGCGA	1 cut(s)	530
BspACI	CCGC	3 cut(s)	257, 338, 461
BspCNI	CTCAG	2 cut(s)	309, 417
BspEI	TCCGGA	1 cut(s)	146
BspFNI	CGCG	2 cut(s)	359, 530
BspMAI	CTGCAG	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	5 cut(s)	16, 223, 234, 265, 631
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	1 cut(s)	483
BssNI	GRCGYC	1 cut(s)	672
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	3 cut(s)	18, 241, 605
BstACI	GRCGYC	1 cut(s)	672
BstAFI	CTTAAG	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	52, 207, 297
BstDEI	CTNAG	3 cut(s)	126, 317, 425
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	359, 530
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 186, 305
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	3 cut(s)	45, 237, 652
BstUI	CGCG	2 cut(s)	359, 530
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	2 cut(s)	585, 675
BsuI	GTATCC	1 cut(s)	413
BtsCI	GGATG	1 cut(s)	327
BtuMI	TCGCGA	1 cut(s)	530
Cac8I	GCNNGC	3 cut(s)	52, 207, 297
Cfr10I	RCCGGY	1 cut(s)	50
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	2 cut(s)	42, 643
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	8 cut(s)	50, 236, 316, 378, 385, 625, 638, 685
CviKI_1	RGCY	8 cut(s)	50, 236, 316, 378, 385, 625, 638, 685
CviQI	GTAC	2 cut(s)	42, 643
DdeI	CTNAG	3 cut(s)	126, 317, 425
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	191
FaeI	CATG	1 cut(s)	511
FatI	CATG	1 cut(s)	507
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	48, 339, 461
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	3 cut(s)	48, 339, 461
GluI	GCNGC	3 cut(s)	48, 339, 461
HapII	CCGG	2 cut(s)	51, 147
HgaI	GACGC	1 cut(s)	680
Hin1I	GRCGYC	1 cut(s)	672
Hin1II	CATG	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	544
HpaII	CCGG	2 cut(s)	51, 147
HphI	GGTGA	2 cut(s)	84, 493
Hpy166II	GTNNAC	2 cut(s)	132, 274
Hpy188I	TCNGA	2 cut(s)	419, 667
Hpy188III	TCNNGA	3 cut(s)	147, 529, 678
Hpy8I	GTNNAC	2 cut(s)	132, 274
Hpy99I	CGWCG	1 cut(s)	535
HpyCH4III	ACNGT	3 cut(s)	18, 241, 605
HpyCH4IV	ACGT	2 cut(s)	410, 533
HpyCH4V	TGCA	4 cut(s)	47, 59, 167, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 186, 305
HpyF3I	CTNAG	3 cut(s)	126, 317, 425
HpySE526I	ACGT	2 cut(s)	410, 533
Hsp92I	GRCGYC	1 cut(s)	672
Hsp92II	CATG	1 cut(s)	511
Kpn2I	TCCGGA	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	1 cut(s)	59
MaeII	ACGT	2 cut(s)	410, 533
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	2 cut(s)	590, 680
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	5 cut(s)	114, 140, 244, 476, 615
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	2 cut(s)	17, 397
MnlI	CCTC	4 cut(s)	312, 396, 599, 685
MroI	TCCGGA	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	4 cut(s)	108, 278, 332, 516
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	463
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	2 cut(s)	51, 147
MspR9I	CCNGG	1 cut(s)	193
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	2 cut(s)	359, 530
MwoI	GCNNNNNNNGC	3 cut(s)	56, 186, 305
NaeI	GCCGGC	1 cut(s)	52
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	1 cut(s)	483
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	90
NruI	TCGCGA	1 cut(s)	530
PctI	GAATGC	1 cut(s)	207
PdiI	GCCGGC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	49, 340, 462
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PshBI	ATTAAT	1 cut(s)	332
Psp1406I	AACGTT	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	49
RruI	TCGCGA	1 cut(s)	530
RsaI	GTAC	2 cut(s)	43, 644
RsaNI	GTAC	2 cut(s)	42, 643
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	4 cut(s)	108, 278, 332, 516
SatI	GCNGC	3 cut(s)	48, 339, 461
Sau3AI	GATC	1 cut(s)	483
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	573
SetI	ASST	7 cut(s)	37, 318, 380, 413, 426, 536, 640
SfcI	CTRYAG	3 cut(s)	45, 237, 652
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	3 cut(s)	277, 572, 676
SmoI	CTYRAG	3 cut(s)	277, 572, 676
Sse9I	AATT	5 cut(s)	114, 140, 244, 476, 615
SsiI	CCGC	3 cut(s)	257, 338, 461
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	3 cut(s)	18, 241, 605
TaiI	ACGT	2 cut(s)	413, 536
TaqI	TCGA	1 cut(s)	501
TasI	AATT	5 cut(s)	114, 140, 244, 476, 615
TatI	WGTACW	2 cut(s)	41, 642
TauI	GCSGC	2 cut(s)	341, 463
Tru1I	TTAA	4 cut(s)	108, 278, 332, 516
Tru9I	TTAA	4 cut(s)	108, 278, 332, 516
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	4 cut(s)	277, 457, 496, 687
TspGWI	ACGGA	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.