Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

36171364 .. 36172894

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1269100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTGTTGACTGGATTGTCTTCTGTTTATTTAGGTTGGAGTACTGCTGCCGGCATTGCAGGGAATGTCTTTGCCTTTGTGTTGTTTCTGTTACCAATACCAACATTTAAGAGAATTGTCATAACCAAGTCAACAGAACAATTCTCTGGATTGCCTTACATATATGCACTTTTGAACTGCTTGATATGCTCCTGGTATGGCTTGCCTATAGTCAAGACTGGTATTATACTGGTGGCTACAGTCAATTCAGTCGTGGCGGTTTTCCAGTTAGTCTACTTGAGCATGTTCATTACATACACTGAAAGAGCGATTAAGCTGAGGATGATGGGATTGATAGCGGCAGTTGTTGTTGTGTTCGCGTTCGTTGTCTTTGTGGGCTTAGGACTTTTAGACTACGATGAGAGGCAAACGTTTGTCGGATACTTGAGTGTTGCTTCGCTCATCTCAATGTTTGCTTCGCCGCTAAACTGGTCAAGGAGTGTTGAGTTCATGCCATTCAATCTTTCTCTCGCGACTTTTCTGATGAGTATCTCTTTCTCTGCATATGGAGTGTTCAAGAAAGACCCTTTCCTCTATAACCCAAATGGTATTGGAACAATTTTAGGGCTTGTCCAATTGGCTCTGTACTCCTACTACAACAATGTATCCGGAGATGCCTCAAGAGAACCGTTGATAGTTTCGTACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

230

Amino Acids

25.2

Weight (kDa)

8.81

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 102	2e-15	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 214	1.6e-14	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	2 cut(s)	359, 512
AccIII	TCCGGA	1 cut(s)	647
AciI	CCGC	3 cut(s)	257, 338, 461
AclI	AACGTT	1 cut(s)	410
AfaI	GTAC	3 cut(s)	43, 626, 683
AgsI	TTSAA	3 cut(s)	175, 499, 556
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Aor13HI	TCCGGA	1 cut(s)	647
ApeKI	GCWGC	1 cut(s)	47
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BbsI	GAAGAC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	193
BciVI	GTATCC	2 cut(s)	413, 655
BfmI	CTRYAG	2 cut(s)	207, 237
BfuI	GTATCC	2 cut(s)	413, 655
BisI	GCNGC	3 cut(s)	48, 339, 461
BlsI	GCNGC	3 cut(s)	49, 340, 462
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	2 cut(s)	317, 379
BpuEI	CTTGAG	3 cut(s)	298, 445, 643
BsaBI	GATNNNNATC	1 cut(s)	527
BsaWI	WCCGGW	1 cut(s)	647
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	5 cut(s)	16, 223, 234, 265, 473
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	527
BseAI	TCCGGA	1 cut(s)	647
BseBI	CCWGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	327
BseJI	GATNNNNATC	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	5 cut(s)	16, 223, 234, 265, 473
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	2 cut(s)	359, 512
BsiSI	CCGG	2 cut(s)	51, 648
BsiWI	CGTACG	1 cut(s)	681
Bsp13I	TCCGGA	1 cut(s)	647
Bsp68I	TCGCGA	1 cut(s)	512
BspACI	CCGC	3 cut(s)	257, 338, 461
BspCNI	CTCAG	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	647
BspFNI	CGCG	2 cut(s)	359, 512
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	5 cut(s)	16, 223, 234, 265, 473
BssAI	RCCGGY	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	241, 669
BstC8I	GCNNGC	2 cut(s)	52, 203
BstDEI	CTNAG	2 cut(s)	317, 379
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	359, 512
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 186
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	2 cut(s)	207, 237
BstUI	CGCG	2 cut(s)	359, 512
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	12
BsuI	GTATCC	2 cut(s)	413, 655
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	297
BtuMI	TCGCGA	1 cut(s)	512
Cac8I	GCNNGC	2 cut(s)	52, 203
Cfr10I	RCCGGY	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	42, 625, 682
CviAII	CATG	2 cut(s)	283, 490
CviJI	RGCY	6 cut(s)	201, 236, 316, 378, 607, 620
CviKI_1	RGCY	6 cut(s)	201, 236, 316, 378, 607, 620
CviQI	GTAC	3 cut(s)	42, 625, 682
DdeI	CTNAG	2 cut(s)	317, 379
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	191
FaeI	CATG	2 cut(s)	286, 493
FatI	CATG	2 cut(s)	282, 489
FauNDI	CATATG	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	48, 339, 461
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	3 cut(s)	48, 339, 461
GluI	GCNGC	3 cut(s)	48, 339, 461
HapII	CCGG	2 cut(s)	51, 648
Hin1II	CATG	2 cut(s)	286, 493
HincII	GTYRAC	2 cut(s)	9, 132
HindII	GTYRAC	2 cut(s)	9, 132
HpaII	CCGG	2 cut(s)	51, 648
Hpy166II	GTNNAC	3 cut(s)	9, 132, 274
Hpy188I	TCNGA	2 cut(s)	419, 522
Hpy188III	TCNNGA	6 cut(s)	147, 214, 511, 556, 648, 660
Hpy8I	GTNNAC	3 cut(s)	9, 132, 274
HpyCH4III	ACNGT	2 cut(s)	241, 669
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	59, 167, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 186
HpyF3I	CTNAG	2 cut(s)	317, 379
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	2 cut(s)	286, 493
Kpn2I	TCCGGA	1 cut(s)	647
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	643
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	12
MfeI	CAATTG	1 cut(s)	614
MluCI	AATT	5 cut(s)	114, 140, 244, 597, 614
MmeI	TCCRAC	2 cut(s)	17, 397
MnlI	CCTC	4 cut(s)	312, 396, 581, 667
MroI	TCCGGA	1 cut(s)	647
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	2 cut(s)	108, 312
MslI	CAYNNNNRTG	1 cut(s)	446
MspI	CCGG	2 cut(s)	51, 648
MspR9I	CCNGG	1 cut(s)	193
MunI	CAATTG	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	2 cut(s)	359, 512
MwoI	GCNNNNNNNGC	2 cut(s)	56, 186
NaeI	GCCGGC	1 cut(s)	52
NdeI	CATATG	1 cut(s)	544
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	286, 493
NruI	TCGCGA	1 cut(s)	512
NspI	RCATGY	1 cut(s)	286
PdiI	GCCGGC	1 cut(s)	52
Pfl23II	CGTACG	1 cut(s)	681
PkrI	GCNGC	3 cut(s)	49, 340, 462
Psp1406I	AACGTT	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspLI	CGTACG	1 cut(s)	681
RruI	TCGCGA	1 cut(s)	512
RsaI	GTAC	3 cut(s)	43, 626, 683
RsaNI	GTAC	3 cut(s)	42, 625, 682
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	108, 312
SatI	GCNGC	3 cut(s)	48, 339, 461
ScaI	AGTACT	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	3 cut(s)	37, 318, 413
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	2 cut(s)	207, 237
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	3 cut(s)	277, 424, 658
SmoI	CTYRAG	3 cut(s)	277, 424, 658
Sse9I	AATT	5 cut(s)	114, 140, 244, 597, 614
SsiI	CCGC	3 cut(s)	257, 338, 461
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	241, 669
TaiI	ACGT	1 cut(s)	413
TasI	AATT	5 cut(s)	114, 140, 244, 597, 614
TatI	WGTACW	2 cut(s)	41, 624
TauI	GCSGC	2 cut(s)	341, 463
Tru1I	TTAA	2 cut(s)	108, 312
Tru9I	TTAA	2 cut(s)	108, 312
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	277, 478
TspRI	CASTG	1 cut(s)	304
XceI	RCATGY	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.