Rh5CG107000

Ribosomal protein L44

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001647
Physical Location & Seq
Reverse (-)
8856467 .. 8858715
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG107000.1

Sequence Viewer

Length: 309 bp
ATGGTGAACGTTCCCAAGACTAAGAAGACCTACTGCAAGAACAAGGCGTGCAAGAAGCACACCTTGCACAAGGTTACACAGTACAAGAAGGGCAAGGACAGTCTTGCTGCTCAGGGAAAGCGTCGTTACGATCGCAAGCAGTCTGGTTATGGAGGTCAGACCAAGCCAGTCTTTCACAAGAAGGCCAAGACTACCAAGAAGATTGTTCTGAGGCTCCAATGCCAGGGATGCAAGCATGTTTCTCAGCATCCAATCAAGGTCAGTGTTTTAGTTTGTGTATGCTTTTGTTTGGTTGCAGTTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L44

Protein Analysis

102

Amino Acids

11.53

Weight (kDa)

10.2

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L44 PF00935 19 - 85 8.3e-29 Ribosomal protein L44
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 9
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 223
AjnI CCWGG 1 cut(s) 222
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 224
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 218, 256
BpiI GAAGAC 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 233, 247
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 3 cut(s) 125, 200, 257
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 223
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 3 cut(s) 124, 201, 256
BspLI GGNNCC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 81, 101
BstAPI GCANNNNNTGC 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 49, 137, 233
BstDEI CTNAG 4 cut(s) 21, 111, 209, 243
BstF5I GGATG 2 cut(s) 233, 247
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 64, 228
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 233, 247
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 49, 137, 233
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 236
CviJI RGCY 3 cut(s) 166, 185, 214
CviKI_1 RGCY 3 cut(s) 166, 185, 214
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 4 cut(s) 21, 111, 209, 243
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 239
FaiI YATR 3 cut(s) 150, 237, 280
FalI AAGNNNNNCTT 4 cut(s) 47, 79, 155, 187
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 2 cut(s) 234, 240
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 185
HgaI GACGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 239
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 159, 210
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 82, 175
HpyCH4III ACNGT 2 cut(s) 81, 101
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 5 cut(s) 36, 51, 67, 231, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 228
HpyF3I CTNAG 4 cut(s) 21, 111, 209, 243
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 5 cut(s) 98, 129, 180, 209, 236
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 218, 256
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 73, 125
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 37, 211
MluCI AATT 1 cut(s) 304
MnlI CCTC 2 cut(s) 146, 204
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 64, 228
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 215
NspI RCATGY 1 cut(s) 239
PkrI GCNGC 1 cut(s) 109
Ple19I CGATCG 1 cut(s) 133
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 215
PvuI CGATCG 1 cut(s) 133
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 224
SetI ASST 6 cut(s) 12, 32, 65, 75, 157, 261
SfaNI GCATC 2 cut(s) 218, 256
Sse9I AATT 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 81, 101
TaiI ACGT 1 cut(s) 12
TasI AATT 1 cut(s) 304
TatI WGTACW 1 cut(s) 81
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 107
TspRI CASTG 1 cut(s) 268
XceI RCATGY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.