Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Forward (+)

3536606 .. 3538975

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G072300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTGTCAACTGGGTTGTCTTCTGTTTATTTAGGTTTCAGTACTGCAGCCGGCATTGCTGGGAATATCTTTGCCTTCGTGTTGTTTGTGTCACCACTGCCAACATTCAAGAGAATCATTAGAAACAAGTCAACAGAACAATTCTCTGGATTGCCTTACATATATGCCTTTTTGAATTGCTTGATATGTCTTTGGTATGGCATGCCTGTAGTGAAGACTGGTATTATATTGGTGGCTACAGTCAATTCATTTGGGGCTGTTTTCCAGTTAGTCTACTTGAGCATTTTCATTACGTACGCTGAAAGAGCAACTAAGCTTAGGATGTTGGGATTATTAGGGGCAGTTGCTGTTGTATTTGCGTTCGTTGTCTTTGTGAGCTTAGGAGTTTTAGAGTATGATGACAGGCAAACGTTCGTTGGATATTTGAGTGTCGCTTCACTTATTTCAATGTTTGCTTCGCCGCTGTTTATCATAAAACTGGTTATCAAAACAAGGAGTGTCGAATTCATGCCATTTAATCTCTCTTTTGCAACTTTCTTGATGAGTCTCTCTTTCTCTGCCTATGGAATATTCAAGGAAGACCCCTTCCTTTATATCCCAAATGGTATTGGAACAATTTTAGGCCTTGTCCAGTTGGCTCTCTACTCCTACTATAGTAAGATATCTGGAGAAGACTCAAGAGAACCATTGATAGTTTCATATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

25.95

Weight (kDa)

9.0

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	1 cut(s)	461
AclI	AACGTT	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	503
AfaI	GTAC	2 cut(s)	43, 296
AgsI	TTSAA	4 cut(s)	109, 175, 447, 574
AluBI	AGCT	2 cut(s)	316, 378
AluI	AGCT	2 cut(s)	316, 378
Alw26I	GTCTC	1 cut(s)	551
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	84
BbsI	GAAGAC	4 cut(s)	12, 221, 585, 678
BbvI	GCAGC	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	551
BfmI	CTRYAG	4 cut(s)	45, 207, 237, 652
BisI	GCNGC	2 cut(s)	48, 461
BlsI	GCNGC	2 cut(s)	49, 462
BmcAI	AGTACT	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	4 cut(s)	12, 221, 585, 678
BpmI	CTGGAG	1 cut(s)	687
Bpu10I	CCTNAGC	2 cut(s)	317, 379
BpuEI	CTTGAG	2 cut(s)	298, 661
BsaAI	YACGTR	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	5 cut(s)	16, 223, 265, 483, 631
Bse3DI	GCAATG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	5 cut(s)	16, 223, 265, 483, 631
BseXI	GCAGC	1 cut(s)	59
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	51
BsiWI	CGTACG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	624
BspACI	CCGC	1 cut(s)	461
BspANI	GGCC	1 cut(s)	624
BspMAI	CTGCAG	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	5 cut(s)	16, 223, 265, 483, 631
BssAI	RCCGGY	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	52, 203
BstDEI	CTNAG	3 cut(s)	312, 317, 379
BstF5I	GGATG	1 cut(s)	327
BstMAI	GTCTC	1 cut(s)	551
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 305
BstNSI	RCATGY	1 cut(s)	205
BstSFI	CTRYAG	4 cut(s)	45, 207, 237, 652
BstSNI	TACGTA	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	4 cut(s)	12, 221, 585, 678
BsuRI	GGCC	1 cut(s)	624
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	2 cut(s)	52, 203
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	42, 295
CviAII	CATG	2 cut(s)	202, 508
CviJI	RGCY	7 cut(s)	50, 236, 257, 316, 378, 624, 638
CviKI_1	RGCY	7 cut(s)	50, 236, 257, 316, 378, 624, 638
CviQI	GTAC	2 cut(s)	42, 295
DdeI	CTNAG	3 cut(s)	312, 317, 379
Eco105I	TACGTA	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	663
EcoRI	GAATTC	1 cut(s)	503
EcoRV	GATATC	1 cut(s)	663
FaeI	CATG	2 cut(s)	205, 511
FatI	CATG	2 cut(s)	201, 507
FauNDI	CATATG	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	48, 461
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	2 cut(s)	48, 461
GluI	GCNGC	2 cut(s)	48, 461
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	205, 511
HincII	GTYRAC	2 cut(s)	9, 132
HindII	GTYRAC	2 cut(s)	9, 132
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	3 cut(s)	114, 544, 674
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	3 cut(s)	9, 132, 274
Hpy188III	TCNNGA	5 cut(s)	109, 147, 538, 666, 678
Hpy8I	GTNNAC	3 cut(s)	9, 132, 274
HpyAV	CCTTC	2 cut(s)	85, 595
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	2 cut(s)	293, 410
HpyCH4V	TGCA	2 cut(s)	47, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 305
HpyF3I	CTNAG	3 cut(s)	312, 317, 379
HpySE526I	ACGT	2 cut(s)	293, 410
Hsp92II	CATG	2 cut(s)	205, 511
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Lsp1109I	GCAGC	1 cut(s)	59
MaeII	ACGT	2 cut(s)	293, 410
MaeIII	GTNAC	1 cut(s)	90
MboII	GAAGA	4 cut(s)	12, 226, 590, 683
MluCI	AATT	5 cut(s)	140, 175, 244, 503, 615
MlyI	GAGTC	2 cut(s)	553, 668
MmeI	TCCRAC	1 cut(s)	397
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	703
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	56, 305
NaeI	GCCGGC	1 cut(s)	52
NdeI	CATATG	1 cut(s)	700
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	205, 511
NmuCI	GTSAC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	624
PdiI	GCCGGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	114
Pfl23II	CGTACG	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	49, 462
PleI	GAGTC	2 cut(s)	552, 668
PpsI	GAGTC	2 cut(s)	552, 668
Ppu21I	YACGTR	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	59
PspLI	CGTACG	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	43, 296
RsaNI	GTAC	2 cut(s)	42, 295
RseI	CAYNNNNRTG	1 cut(s)	703
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	2 cut(s)	48, 461
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	2 cut(s)	553, 668
SetI	ASST	5 cut(s)	37, 296, 318, 380, 413
SfcI	CTRYAG	4 cut(s)	45, 207, 237, 652
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	2 cut(s)	277, 676
SmoI	CTYRAG	2 cut(s)	277, 676
SnaBI	TACGTA	1 cut(s)	294
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	5 cut(s)	140, 175, 244, 503, 615
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	1 cut(s)	461
SspI	AATATT	1 cut(s)	570
StuI	AGGCCT	1 cut(s)	624
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	2 cut(s)	296, 413
TaqI	TCGA	1 cut(s)	501
TasI	AATT	5 cut(s)	140, 175, 244, 503, 615
TatI	WGTACW	1 cut(s)	41
TauI	GCSGC	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	4 cut(s)	237, 277, 496, 687
TspRI	CASTG	1 cut(s)	102
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.