Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

28067816 .. 28069963

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26970.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGTTATACAGAGAGAAGAGAGGGAGCTTCTGCTTGCTTGGTGTTTTGAATATATACATACATATTTTCTTATAACCTGGGTTCTGGTAATTGATAGATCAATGTTGTCAACTGAACTGTCTTCTGTTTATCAAAGTTTCTGCGATGGAGCCGGCGTTCTCGGGAATATCTTTGCCTTTGGGTTGTATCTGTCACCACTGTCAACATTTAACAGAATTATTAGAAACAGGTCAACAGAACAATTTTCTGGAATGCCTTACATATATGGACTTTTGAATTGCTTGATATGTTGCTGGTATGGAATGCCTATAGTGAAGAGTGGTATTATACTGGTGGCTACAGTCAATTCAGTTGGGACTGTTTTCCAGTTAGTCTACTTGAGCATTTTCATTTCTTACGCCGAAAGAGCGGTTAAGATGAGGATGTTGGGATTGTTAATTGCAGTTTTCGTTCTATTTGTGTCCATTGTCGTTGTCAGCTTAAGTCTTTTCGACTACAATGGGAGGCAATTATTTGTTGGATACTTGAGTATTGCTTCACTTATTTTCATGTATGGTTCGCCATTGATTGTCATAAATTTGGTGATCAAAACAAAAAGCGTTGAGTTCATGCCATTTAATCTTTCTTTTGCCACTTTCTTAGTGAGTTTCTCCTTCACTACATATGGAGTGTTCAAGATGGACCCTTTTCTCTATATGCCAAATGGTATTGGAACAATGTTAGCCCTTGTACAGTTGGTTCTGTACTGCCGCTACAAAAATCCATCTGAAGAAGATGCGGAAGAAGAAGAAGAACCATTGCTAGCTACACATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

273

Amino Acids

30.91

Weight (kDa)

5.26

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	375
AciI	CCGC	3 cut(s)	410, 751, 779
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	2 cut(s)	732, 746
AflII	CTTAAG	1 cut(s)	481
AgsI	TTSAA	3 cut(s)	50, 277, 676
AjnI	CCWGG	1 cut(s)	77
AleI	CACNNNNGTG	1 cut(s)	814
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	3 cut(s)	28, 480, 806
AluI	AGCT	3 cut(s)	28, 480, 806
Ama87I	CYCGRG	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	682
AsuHPI	GGTGA	2 cut(s)	186, 595
AsuNHI	GCTAGC	1 cut(s)	802
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	682
BaeI	ACNNNNGTAYC	2 cut(s)	514, 547
BbsI	GAAGAC	1 cut(s)	114
BccI	CCATC	3 cut(s)	140, 673, 772
BciT130I	CCWGG	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	515
BclI	TGATCA	1 cut(s)	585
BfaI	CTAG	1 cut(s)	803
BfmI	CTRYAG	2 cut(s)	309, 339
BfrI	CTTAAG	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	1 cut(s)	751
BlsI	GCNGC	1 cut(s)	752
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	2 cut(s)	151, 684
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	766
BmtI	GCTAGC	1 cut(s)	806
BpiI	GAAGAC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	400, 547
BsaJI	CCNNGG	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	336, 367
Bse3DI	GCAATG	1 cut(s)	797
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	429, 811
BseMI	GCAATG	1 cut(s)	797
BseNI	ACTGG	2 cut(s)	336, 367
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	2 cut(s)	258, 309
BsoBI	CYCGRG	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	2 cut(s)	98, 585
BspACI	CCGC	3 cut(s)	410, 751, 779
BspLI	GGNNCC	2 cut(s)	151, 684
BspOI	GCTAGC	1 cut(s)	806
BspTI	CTTAAG	1 cut(s)	481
BsrBI	CCGCTC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	797
BsrFI	RCCGGY	1 cut(s)	152
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	336, 367
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	98, 585
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	5 cut(s)	120, 201, 343, 361, 735
Bst6I	CTCTTC	2 cut(s)	12, 311
BstAFI	CTTAAG	1 cut(s)	481
BstAUI	TGTACA	1 cut(s)	730
BstC8I	GCNNGC	3 cut(s)	36, 154, 804
BstDEI	CTNAG	1 cut(s)	640
BstF5I	GGATG	2 cut(s)	429, 811
BstKTI	GATC	2 cut(s)	101, 588
BstMBI	GATC	2 cut(s)	98, 585
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	2 cut(s)	309, 339
BstV2I	GAAGAC	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	515
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	429, 811
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	36, 154, 804
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	682
Csp6I	GTAC	2 cut(s)	731, 745
CviAII	CATG	2 cut(s)	550, 610
CviJI	RGCY	6 cut(s)	28, 152, 338, 480, 725, 806
CviKI_1	RGCY	6 cut(s)	28, 152, 338, 480, 725, 806
CviQI	GTAC	2 cut(s)	731, 745
DdeI	CTNAG	1 cut(s)	640
DpnI	GATC	2 cut(s)	100, 587
DpnII	GATC	2 cut(s)	98, 585
Eam1104I	CTCTTC	2 cut(s)	12, 311
EarI	CTCTTC	2 cut(s)	12, 311
Eco47I	GGWCC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	553, 613
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	2 cut(s)	549, 609
FauNDI	CATATG	1 cut(s)	664
FbaI	TGATCA	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	751
FokI	GGATG	2 cut(s)	436, 798
Fsp4HI	GCNGC	1 cut(s)	751
FspBI	CTAG	1 cut(s)	803
GluI	GCNGC	1 cut(s)	751
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	553, 613
HincII	GTYRAC	3 cut(s)	111, 204, 234
HindII	GTYRAC	3 cut(s)	111, 204, 234
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	186, 595
Hpy166II	GTNNAC	4 cut(s)	111, 204, 234, 376
Hpy188I	TCNGA	1 cut(s)	769
Hpy188III	TCNNGA	3 cut(s)	163, 249, 676
Hpy8I	GTNNAC	4 cut(s)	111, 204, 234, 376
HpyAV	CCTTC	1 cut(s)	664
HpyCH4III	ACNGT	5 cut(s)	120, 201, 343, 361, 735
HpyCH4V	TGCA	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	640
Hsp92II	CATG	2 cut(s)	553, 613
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	2 cut(s)	98, 585
LmnI	GCTCC	2 cut(s)	25, 149
LpnPI	CCDG	9 cut(s)	64, 71, 91, 166, 214, 234, 280, 317, 380
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	1 cut(s)	803
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	2 cut(s)	100, 587
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	2 cut(s)	98, 585
MboII	GAAGA	9 cut(s)	29, 114, 328, 782, 785, 794, 797, 800, 803
MluCI	AATT	8 cut(s)	90, 216, 242, 277, 346, 438, 509, 577
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	3 cut(s)	15, 414, 498
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	5 cut(s)	210, 414, 437, 482, 618
MslI	CAYNNNNRTG	1 cut(s)	814
MspCI	CTTAAG	1 cut(s)	481
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	2 cut(s)	258, 309
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	407
NaeI	GCCGGC	1 cut(s)	154
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	2 cut(s)	98, 585
NgoMIV	GCCGGC	1 cut(s)	152
NheI	GCTAGC	1 cut(s)	802
NlaIII	CATG	2 cut(s)	553, 613
NlaIV	GGNNCC	2 cut(s)	151, 684
NmuCI	GTSAC	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	814
PctI	GAATGC	2 cut(s)	258, 309
PdiI	GCCGGC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	752
PsiI	TTATAA	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	151, 684
PspPI	GGNCC	1 cut(s)	682
PsrI	GAACNNNNNNTAC	2 cut(s)	723, 755
RsaI	GTAC	2 cut(s)	732, 746
RsaNI	GTAC	2 cut(s)	731, 745
RseI	CAYNNNNRTG	1 cut(s)	814
SaqAI	TTAA	5 cut(s)	210, 414, 437, 482, 618
SatI	GCNGC	1 cut(s)	751
Sau3AI	GATC	2 cut(s)	98, 585
Sau96I	GGNCC	1 cut(s)	682
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	5 cut(s)	30, 80, 233, 482, 808
SfaNI	GCATC	1 cut(s)	766
SfcI	CTRYAG	2 cut(s)	309, 339
SinI	GGWCC	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	814
SmlI	CTYRAG	3 cut(s)	379, 481, 526
SmoI	CTYRAG	3 cut(s)	379, 481, 526
Sse9I	AATT	8 cut(s)	90, 216, 242, 277, 346, 438, 509, 577
SsiI	CCGC	3 cut(s)	410, 751, 779
SspMI	CTAG	1 cut(s)	803
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	5 cut(s)	120, 201, 343, 361, 735
TaqI	TCGA	1 cut(s)	492
TasI	AATT	8 cut(s)	90, 216, 242, 277, 346, 438, 509, 577
TatI	WGTACW	2 cut(s)	730, 744
TauI	GCSGC	1 cut(s)	753
Tru1I	TTAA	5 cut(s)	210, 414, 437, 482, 618
Tru9I	TTAA	5 cut(s)	210, 414, 437, 482, 618
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	192
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	3 cut(s)	379, 538, 598
TspGWI	ACGGA	1 cut(s)	804
TspRI	CASTG	1 cut(s)	204
Vha464I	CTTAAG	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	682
XapI	RAATTY	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.