RchiOBHm_Chr7g0178071

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001647
Physical Location & Seq
Forward (+)
875444 .. 876953
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15868

Sequence Viewer

Length: 318 bp
ATGGTGAACGTTCCGAAGACAAAGAAGACCTACTGCAAGAACAAAGAGTGCAAAAAACACACCTTGCACAAAGTCACGCAATACAAGAAAGGAAAGGACAGCCTTGCTGCTCAGGGAAAGCGTCGTTATGATCGTAAGCAATCGGGTTATGGAGGTCAGACCAAGCCGGTGTTTCACAAGAAGGCCAAAACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATGTGTCGCAGCACCCAATCAAGAGGTGCAAGCACTTTGAGATTGGAGGAGACAAGAAGGGCAAGGGAACCTCTCTTTTCTAG

Protein Analysis

105

Amino Acids

12.03

Weight (kDa)

10.29

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L44 PF00935 19 - 94 1.4e-33 Ribosomal protein L44
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 223
AjnI CCWGG 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 279
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 107, 244
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 2 cut(s) 23, 32
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 94, 256
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 1 cut(s) 316
BisI GCNGC 2 cut(s) 108, 245
BlsI GCNGC 2 cut(s) 109, 246
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 215, 304
BmrFI CCNGG 1 cut(s) 224
BpiI GAAGAC 2 cut(s) 23, 32
Bpu10I CCTNAGC 2 cut(s) 111, 209
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 166
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 125, 200
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 94, 256
BshFI GGCC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 279
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 124, 201
BspLI GGNNCC 2 cut(s) 215, 304
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 233, 266
BstDEI CTNAG 2 cut(s) 111, 209
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 228, 241
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 94, 256
BstV2I GAAGAC 2 cut(s) 23, 32
BsuRI GGCC 1 cut(s) 185
Cac8I GCNNGC 2 cut(s) 233, 266
Cfr10I RCCGGY 1 cut(s) 166
CseI GACGC 1 cut(s) 110
CviAII CATG 1 cut(s) 236
CviJI RGCY 4 cut(s) 102, 166, 185, 214
CviKI_1 RGCY 4 cut(s) 102, 166, 185, 214
DdeI CTNAG 2 cut(s) 111, 209
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 239
FaiI YATR 3 cut(s) 129, 150, 237
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 108, 245
Fsp4HI GCNGC 2 cut(s) 108, 245
FspBI CTAG 1 cut(s) 316
GluI GCNGC 2 cut(s) 108, 245
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 167
HgaI GACGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 239
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 15, 159
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 175, 286
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 5 cut(s) 36, 51, 67, 231, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 241
HpyF3I CTNAG 2 cut(s) 111, 209
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 4 cut(s) 98, 180, 209, 236
Lsp1109I GCAGC 2 cut(s) 94, 256
MaeI CTAG 1 cut(s) 316
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 28, 37, 211
MnlI CCTC 5 cut(s) 146, 204, 252, 275, 316
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 228, 241
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 215, 304
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PkrI GCNGC 2 cut(s) 109, 246
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 215, 304
SatI GCNGC 2 cut(s) 108, 245
Sau3AI GATC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 224
SetI ASST 6 cut(s) 12, 32, 65, 157, 263, 308
SspMI CTAG 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 12
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 2 cut(s) 107, 244
Tsp45I GTSAC 1 cut(s) 73
XceI RCATGY 1 cut(s) 239
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.