Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

8689179 .. 8691429

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29336

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTGACAATGGAGTTGTCTTCTGTGTATTTAGGTTTCAGTGTTGCAGCTGGAATTGCTGGTAATGTCTTTGCATTTGTGTTGTTTGTCTCACCAATACCAACATTTAAGAGAATCATCCGAAACAAGTCAACGGAACAATTCTCAGGATTGCCTTACATATATGCCTTTCTGAATTGCTTGATATGCCTCTGGTATGGCTCGCCTGCCGTGAAGACTGGGATCATATGGGTGGCTACAGTCAATTCATTTGGGGCAGTTTTCCAGTTAATCTACATAAGCATTTTCATCGCTTATGCTGAAAAAGAAATTAAGGTGAGGATGCTGGGATTGCTACTGGTAGTTCTTGCTATTTTTGGATTGATAGTCTATGTGAGCTTAAAAGTTTTAGACTATGATGGAAGGCAGATATTTGTCGGATATTTGAGTGTTTTTTCACTTATCTCAATGTTTGCTTCACCGCTGTTTATCATAAAATTGGTGATAAAAACAAGGAGCGTCGAGTTCATGCCATTCTATCTTTCTCTTGCAACCTTCTTGATGAGTCTCTCTTTCTCTGCATACGGAGTGTTCAAGGAAGATCCATTCCTATATGTTCCGAATGGTATTGGAACAATTTTGGCTATTGTCCAATTGGCTTTGTACTTCTACTACAGCAATCTATCTAAGAAAGGCTTGAGAGAACCCTTGATAGTTACATATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

235

Amino Acids

26.35

Weight (kDa)

9.32

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 103	2.7e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 220	1.3e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	461
AclWI	GGATC	2 cut(s)	230, 575
AfaI	GTAC	1 cut(s)	644
AgsI	TTSAA	1 cut(s)	574
AluBI	AGCT	2 cut(s)	50, 378
AluI	AGCT	2 cut(s)	50, 378
Alw26I	GTCTC	2 cut(s)	94, 551
AlwI	GGATC	2 cut(s)	230, 575
ApeKI	GCWGC	1 cut(s)	47
AsuHPI	GGTGA	4 cut(s)	84, 328, 450, 493
BbsI	GAAGAC	2 cut(s)	12, 221
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BcoDI	GTCTC	2 cut(s)	94, 551
BfmI	CTRYAG	2 cut(s)	237, 652
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	12, 221
BpuEI	CTTGAG	1 cut(s)	697
Bse1I	ACTGG	3 cut(s)	223, 265, 342
BseGI	GGATG	2 cut(s)	117, 327
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	3 cut(s)	223, 265, 342
BseXI	GCAGC	1 cut(s)	59
BseYI	CCCAGC	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	94, 551
Bsp143I	GATC	2 cut(s)	222, 580
BspACI	CCGC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	158
BspPI	GGATC	2 cut(s)	230, 575
BsrI	ACTGG	3 cut(s)	223, 265, 342
BssMI	GATC	2 cut(s)	222, 580
Bst4CI	ACNGT	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	203, 207
BstDEI	CTNAG	2 cut(s)	145, 666
BstF5I	GGATG	2 cut(s)	117, 327
BstKTI	GATC	2 cut(s)	225, 583
BstMAI	GTCTC	2 cut(s)	94, 551
BstMBI	GATC	2 cut(s)	222, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
BstSFI	CTRYAG	2 cut(s)	237, 652
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	2 cut(s)	12, 221
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	117, 327
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	203, 207
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	7 cut(s)	50, 201, 236, 378, 623, 638, 675
CviKI_1	RGCY	7 cut(s)	50, 201, 236, 378, 623, 638, 675
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	145, 666
DpnI	GATC	2 cut(s)	224, 582
DpnII	GATC	2 cut(s)	222, 580
FaeI	CATG	1 cut(s)	511
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FatI	CATG	1 cut(s)	507
FauNDI	CATATG	2 cut(s)	227, 700
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	2 cut(s)	104, 334
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	329
HgaI	GACGC	1 cut(s)	487
Hin1II	CATG	1 cut(s)	511
HincII	GTYRAC	2 cut(s)	6, 132
HindII	GTYRAC	2 cut(s)	6, 132
HinfI	GANTC	2 cut(s)	114, 544
HphI	GGTGA	4 cut(s)	84, 328, 450, 493
Hpy166II	GTNNAC	2 cut(s)	6, 132
Hpy188I	TCNGA	4 cut(s)	122, 174, 419, 600
Hpy188III	TCNNGA	2 cut(s)	147, 538
Hpy8I	GTNNAC	2 cut(s)	6, 132
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	2 cut(s)	396, 544
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	4 cut(s)	47, 74, 530, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
HpyF3I	CTNAG	2 cut(s)	145, 666
Hsp92II	CATG	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	222, 580
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	9 cut(s)	36, 45, 132, 178, 204, 219, 278, 311, 323
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	2 cut(s)	224, 582
MboI	GATC	2 cut(s)	222, 580
MboII	GAAGA	3 cut(s)	12, 226, 590
MfeI	CAATTG	1 cut(s)	632
MflI	RGATCY	1 cut(s)	580
MluCI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	2 cut(s)	200, 312
MseI	TTAA	4 cut(s)	108, 269, 312, 380
MslI	CAYNNNNRTG	2 cut(s)	230, 703
MspA1I	CMGCKG	2 cut(s)	50, 463
MunI	CAATTG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
NdeI	CATATG	2 cut(s)	227, 700
NdeII	GATC	2 cut(s)	222, 580
NlaIII	CATG	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PspFI	CCCAGC	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	2 cut(s)	230, 703
SaqAI	TTAA	4 cut(s)	108, 269, 312, 380
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	222, 580
SchI	GAGTC	1 cut(s)	553
SetI	ASST	5 cut(s)	37, 52, 318, 380, 536
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	2 cut(s)	237, 652
SmiMI	CAYNNNNRTG	2 cut(s)	230, 703
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
SsiI	CCGC	1 cut(s)	461
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	501
TasI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
TatI	WGTACW	1 cut(s)	642
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	4 cut(s)	108, 269, 312, 380
Tru9I	TTAA	4 cut(s)	108, 269, 312, 380
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	237, 277, 496
TspGWI	ACGGA	2 cut(s)	149, 579
TspRI	CASTG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.