Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

42458344 .. 42460525

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1293200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTGTCAACTGAACTGTCTTCTGTTTATCAAAGTTTCTGCGATGGAGCCGGCGTTCTCGGGAATATCTTTGCCTTTGGGTTGTATCTGTCACCACTGTCAACATTCAATAGAATTATCAGAAACAGGTCAACAGAACAATTTTCTGGAATGCCTTACATATATGGACTTTTGAATTGCTTGATATGTTGCTGGTATGGAATGCCTATAGTGAAGAATGGCATTATACTGGTGGCTACAGTCAATTCAGTTGGGACTGTTTTCCAGTTAGTCTACTTGTGCATTTTCATTTCTTACGCCGAAAGAGCGCTTAAGATGAAGATGTTGGCATTGTTAATCGCAGTTTTCGTTCTATTTGTGTCCATTGTCGTTGTCAGCTTAAGTCTTTTCGACTACAATGGGAGGCAATTATTTGTTGGATACTTGAGTATTGCTTCACTTATTTTCATGTATGGTTCGCCATTGATTGTCATAAATTTGGTGATCAAAACAAAAAGCGTTGAGTTCATGCCATTTAATCTTTCTTTTGCAACTTTCTTAGTGAGTTTCTCCTTCACTGCCTATGGAGTGTTCAAGATGGACCCTTTTCTATATATGCCAAATGGTATTGGAACAATGTTAGCCCTTGTACAGTTGGTTCTGTACTGCCGCTACAAAAATCCATCTGAAGAAGACGCGGTAGAAGAAGAAGAAGAACCATTGCTAGCTACACATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

240

Amino Acids

26.75

Weight (kDa)

5.42

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 102	8.5e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 221	1.5e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	677
AciI	CCGC	2 cut(s)	649, 677
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	2 cut(s)	630, 644
AfeI	AGCGCT	1 cut(s)	309
AflII	CTTAAG	2 cut(s)	311, 379
AgsI	TTSAA	3 cut(s)	109, 175, 574
AleI	CACNNNNGTG	1 cut(s)	715
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	2 cut(s)	378, 707
AluI	AGCT	2 cut(s)	378, 707
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	475
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	580
AsuHPI	GGTGA	2 cut(s)	84, 493
AsuNHI	GCTAGC	1 cut(s)	703
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	580
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BbsI	GAAGAC	2 cut(s)	12, 678
BccI	CCATC	3 cut(s)	38, 571, 670
BciVI	GTATCC	1 cut(s)	413
BclI	TGATCA	1 cut(s)	483
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	2 cut(s)	207, 237
BfoI	RGCGCY	1 cut(s)	311
BfrI	CTTAAG	2 cut(s)	311, 379
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	1 cut(s)	649
BlsI	GCNGC	1 cut(s)	650
Bme18I	GGWCC	1 cut(s)	580
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	2 cut(s)	49, 582
BmtI	GCTAGC	1 cut(s)	707
BpiI	GAAGAC	2 cut(s)	12, 678
BpuEI	CTTGAG	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	234, 265
Bse3DI	GCAATG	1 cut(s)	698
BseGI	GGATG	1 cut(s)	712
BseMI	GCAATG	1 cut(s)	698
BseNI	ACTGG	2 cut(s)	234, 265
Bsh1236I	CGCG	1 cut(s)	677
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	2 cut(s)	156, 207
BsoBI	CYCGRG	1 cut(s)	59
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	1 cut(s)	483
BspACI	CCGC	2 cut(s)	649, 677
BspFNI	CGCG	1 cut(s)	677
BspLI	GGNNCC	2 cut(s)	49, 582
BspOI	GCTAGC	1 cut(s)	707
BspTI	CTTAAG	2 cut(s)	311, 379
BsrDI	GCAATG	1 cut(s)	698
BsrFI	RCCGGY	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	234, 265
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	1 cut(s)	483
Bst4CI	ACNGT	5 cut(s)	18, 99, 241, 259, 633
BstAFI	CTTAAG	2 cut(s)	311, 379
BstAUI	TGTACA	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	52, 705
BstDEI	CTNAG	1 cut(s)	538
BstF5I	GGATG	1 cut(s)	712
BstFNI	CGCG	1 cut(s)	677
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	486
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstSFI	CTRYAG	2 cut(s)	207, 237
BstUI	CGCG	1 cut(s)	677
BstV2I	GAAGAC	2 cut(s)	12, 678
BsuI	GTATCC	1 cut(s)	413
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	712
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	95, 555
Cac8I	GCNNGC	2 cut(s)	52, 705
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	580
CseI	GACGC	1 cut(s)	683
Csp6I	GTAC	2 cut(s)	629, 643
CviAII	CATG	2 cut(s)	448, 508
CviJI	RGCY	5 cut(s)	50, 236, 378, 623, 707
CviKI_1	RGCY	5 cut(s)	50, 236, 378, 623, 707
CviQI	GTAC	2 cut(s)	629, 643
DdeI	CTNAG	1 cut(s)	538
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	580
Eco47III	AGCGCT	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	59
FaeI	CATG	2 cut(s)	451, 511
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	447, 507
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	649
FokI	GGATG	1 cut(s)	699
Fsp4HI	GCNGC	1 cut(s)	649
FspBI	CTAG	1 cut(s)	704
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	649
HaeII	RGCGCY	1 cut(s)	311
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	683
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	451, 511
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	3 cut(s)	9, 102, 132
HindII	GTYRAC	3 cut(s)	9, 102, 132
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	84, 493
Hpy166II	GTNNAC	4 cut(s)	9, 102, 132, 274
Hpy188I	TCNGA	2 cut(s)	122, 667
Hpy188III	TCNNGA	3 cut(s)	61, 147, 574
Hpy8I	GTNNAC	4 cut(s)	9, 102, 132, 274
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	5 cut(s)	18, 99, 241, 259, 633
HpyCH4V	TGCA	2 cut(s)	282, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	1 cut(s)	538
Hsp92II	CATG	2 cut(s)	451, 511
HspAI	GCGC	1 cut(s)	308
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	6 cut(s)	64, 112, 132, 178, 215, 278
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	9 cut(s)	12, 226, 331, 680, 683, 695, 698, 701, 704
MluCI	AATT	6 cut(s)	114, 140, 175, 244, 407, 475
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	1 cut(s)	396
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	4 cut(s)	312, 335, 380, 516
MslI	CAYNNNNRTG	1 cut(s)	715
MspCI	CTTAAG	2 cut(s)	311, 379
MspI	CCGG	1 cut(s)	51
Mva1269I	GAATGC	2 cut(s)	156, 207
MvnI	CGCG	1 cut(s)	677
MwoI	GCNNNNNNNGC	1 cut(s)	305
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	483
NgoMIV	GCCGGC	1 cut(s)	50
NheI	GCTAGC	1 cut(s)	703
NlaIII	CATG	2 cut(s)	451, 511
NlaIV	GGNNCC	2 cut(s)	49, 582
NmuCI	GTSAC	1 cut(s)	90
OliI	CACNNNNGTG	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	2 cut(s)	156, 207
PdiI	GCCGGC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	650
PspN4I	GGNNCC	2 cut(s)	49, 582
PspPI	GGNCC	1 cut(s)	580
PsrI	GAACNNNNNNTAC	2 cut(s)	621, 653
RsaI	GTAC	2 cut(s)	630, 644
RsaNI	GTAC	2 cut(s)	629, 643
RseI	CAYNNNNRTG	1 cut(s)	715
SaqAI	TTAA	4 cut(s)	312, 335, 380, 516
SatI	GCNGC	1 cut(s)	649
Sau3AI	GATC	1 cut(s)	483
Sau96I	GGNCC	1 cut(s)	580
SetI	ASST	3 cut(s)	131, 380, 709
SfcI	CTRYAG	2 cut(s)	207, 237
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	715
SmlI	CTYRAG	3 cut(s)	311, 379, 424
SmoI	CTYRAG	3 cut(s)	311, 379, 424
Sse9I	AATT	6 cut(s)	114, 140, 175, 244, 407, 475
SsiI	CCGC	2 cut(s)	649, 677
SspMI	CTAG	1 cut(s)	704
TaaI	ACNGT	5 cut(s)	18, 99, 241, 259, 633
TaqI	TCGA	1 cut(s)	390
TasI	AATT	6 cut(s)	114, 140, 175, 244, 407, 475
TatI	WGTACW	2 cut(s)	628, 642
TauI	GCSGC	1 cut(s)	651
Tru1I	TTAA	4 cut(s)	312, 335, 380, 516
Tru9I	TTAA	4 cut(s)	312, 335, 380, 516
TscAI	CASTG	2 cut(s)	102, 562
TseFI	GTSAC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	4 cut(s)	277, 332, 436, 496
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	102, 562
Vha464I	CTTAAG	2 cut(s)	311, 379
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.