Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Forward (+)

31141487 .. 31142386

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0285800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTAGATATTAACAATACTCCTTTAAGAGGTGAGATTGGTCCCTCACTACTTGAATTGCCATATCTATATTACTTGGACCTCGGTTTTAATTCTTTTAATGGAACGATTCCCAAGTTCTTTGGTTCTTTGAGTCCGTTGAAAGTACTCAAACTTGGATACAACAATTTTAGCGGATCTATTCCTCCCCAACTTGGCAATCTATCCAATTTGCATACTCTTGATCTTTCAGGGAACTCTGTTACTTCTGAAAATCTCGAGTGGGTATCTCAGCTTTCTTCCTTGAGATACTTGAACATGTCATATCTTAATTTCTCTGGTGCTGTAAATTGGCCCCAATCTATAAGCCAGCTCCCTTCACTGATAGAGCTTCAGTTAGATTCATGTGATCTTCCTGATGTTGATATGGCATCACTTTCCTTTATTAATTCTTCCACCTCTCTTCGAGTATTTCATCTCCCTCGTAATTTCCTCAGTTCTTCAGTATTTTGTTGGATAGGCAATGTCAGCAAGAACCTTGTTTCCATTGGCCTATCTAATAACAGGATTAAAGGTCCCATCCCAGATGCTTTCACAAACATGGATTCTCTTTTATCTCTTGACCTCTCTTATAATCAAATTGAAGGTGGCATACCAAATTCCTTTCGAAGCCTATGCAGATTGGAAAAACTAAATTTATTGTCAAACAATTTTTCTGACAAACTTGAACAATCTATAGGCAACTTGTCTTGTGCACAGGATACCCTTATGTCATTATACTTGGGTGGAAATCTGTGGTGGGGGTCATTTCCTGATGATCTTACAAGGTTTGTATCCTTGGAAGAATTGGACATCGACAATGCCACTATGAGTGGGTTGTTGTGCGGAAGCGTAACAAACACAATATTGATATGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L44

Protein Analysis

299

Amino Acids

33.03

Weight (kDa)

4.5

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	14 - 152	2.9e-09	Leucine-rich repeat region
LRR_8	PF13855	21 - 80	7.6e-10	Leucine rich repeat
LRR_8	PF13855	172 - 231	4.2e-11	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AciI	CCGC	2 cut(s)	174, 864
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	2 cut(s)	637, 673
AcuI	CTGAAG	2 cut(s)	356, 465
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	29, 194
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	5 cut(s)	56, 142, 295, 623, 707
AloI	GAACNNNNNNTCC	2 cut(s)	506, 538
AluBI	AGCT	3 cut(s)	274, 352, 370
AluI	AGCT	3 cut(s)	274, 352, 370
Alw21I	GWGCWC	1 cut(s)	736
Alw44I	GTGCAC	1 cut(s)	732
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	332, 529
ApaLI	GTGCAC	1 cut(s)	732
ApoI	RAATTY	2 cut(s)	637, 673
AseI	ATTAAT	1 cut(s)	426
AspS9I	GGNCC	4 cut(s)	41, 79, 333, 554
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	646
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	3 cut(s)	41, 79, 554
BaeGI	GKGCMC	1 cut(s)	736
BarI	GAAGNNNNNNTAC	2 cut(s)	615, 647
Bbv12I	GWGCWC	1 cut(s)	736
BccI	CCATC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	636, 670
BciVI	GTATCC	3 cut(s)	152, 733, 823
BfaI	CTAG	2 cut(s)	5, 898
BfmI	CTRYAG	1 cut(s)	714
BfuI	GTATCC	3 cut(s)	152, 733, 823
BmcAI	AGTACT	1 cut(s)	147
Bme18I	GGWCC	3 cut(s)	41, 79, 554
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	4 cut(s)	41, 79, 333, 554
BmiI	GGNNCC	3 cut(s)	43, 335, 556
BmsI	GCATC	2 cut(s)	419, 556
Bpu14I	TTCGAA	1 cut(s)	646
BpuEI	CTTGAG	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	82, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 194
Bse3DI	GCAATG	1 cut(s)	508
BseDI	CCNNGG	2 cut(s)	82, 816
BseGI	GGATG	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	29, 194
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	284, 487
BseSI	GKGCMC	1 cut(s)	736
BshFI	GGCC	2 cut(s)	334, 531
BsiHKAI	GWGCWC	1 cut(s)	736
BsiHKCI	CYCGRG	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	27, 540
BslI	CCNNNNNNNGG	2 cut(s)	29, 194
BsmFI	GGGAC	2 cut(s)	27, 540
BsnI	GGCC	2 cut(s)	334, 531
BsoBI	CYCGRG	1 cut(s)	257
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp143I	GATC	4 cut(s)	176, 223, 388, 796
BspACI	CCGC	2 cut(s)	174, 864
BspANI	GGCC	2 cut(s)	334, 531
BspCNI	CTCAG	2 cut(s)	283, 486
BspLI	GGNNCC	3 cut(s)	43, 335, 556
BspPI	GGATC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	82, 816
BssMI	GATC	4 cut(s)	176, 223, 388, 796
BssT1I	CCWWGG	1 cut(s)	816
Bst6I	CTCTTC	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	270, 473
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	558
BstKTI	GATC	4 cut(s)	179, 226, 391, 799
BstMBI	GATC	4 cut(s)	176, 223, 388, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	1 cut(s)	736
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuI	GTATCC	3 cut(s)	152, 733, 823
BsuRI	GGCC	2 cut(s)	334, 531
BtsCI	GGATG	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	4 cut(s)	41, 79, 333, 554
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	3 cut(s)	298, 384, 580
CviJI	RGCY	7 cut(s)	274, 334, 348, 352, 370, 531, 651
CviKI_1	RGCY	7 cut(s)	274, 334, 348, 352, 370, 531, 651
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	270, 473
DpnI	GATC	4 cut(s)	178, 225, 390, 798
DpnII	GATC	4 cut(s)	176, 223, 388, 796
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	816
Eco47I	GGWCC	3 cut(s)	41, 79, 554
Eco57I	CTGAAG	2 cut(s)	356, 465
Eco88I	CYCGRG	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	3 cut(s)	301, 387, 583
FaqI	GGGAC	2 cut(s)	27, 540
FatI	CATG	3 cut(s)	297, 383, 579
FokI	GGATG	1 cut(s)	545
FspBI	CTAG	2 cut(s)	5, 898
HaeIII	GGCC	2 cut(s)	334, 531
Hin1II	CATG	3 cut(s)	301, 387, 583
HinfI	GANTC	4 cut(s)	109, 133, 380, 584
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	734
Hpy188I	TCNGA	2 cut(s)	250, 697
Hpy188III	TCNNGA	5 cut(s)	221, 257, 395, 599, 791
Hpy8I	GTNNAC	1 cut(s)	734
HpyAV	CCTTC	2 cut(s)	366, 617
HpyCH4V	TGCA	3 cut(s)	214, 657, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	2 cut(s)	270, 473
Hsp92II	CATG	3 cut(s)	301, 387, 583
Kzo9I	GATC	4 cut(s)	176, 223, 388, 796
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	8 cut(s)	216, 303, 362, 408, 529, 576, 722, 804
LweI	GCATC	2 cut(s)	419, 556
MaeI	CTAG	2 cut(s)	5, 898
MaeIII	GTNAC	2 cut(s)	241, 871
MalI	GATC	4 cut(s)	178, 225, 390, 798
MboI	GATC	4 cut(s)	176, 223, 388, 796
MboII	GAAGA	6 cut(s)	270, 383, 423, 434, 471, 833
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	736
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	8 cut(s)	23, 55, 92, 195, 448, 471, 482, 614
MseI	TTAA	7 cut(s)	12, 26, 90, 99, 309, 426, 549
MslI	CAYNNNNRTG	1 cut(s)	578
MwoI	GCNNNNNNNGC	1 cut(s)	507
NdeII	GATC	4 cut(s)	176, 223, 388, 796
NlaIII	CATG	3 cut(s)	301, 387, 583
NlaIV	GGNNCC	3 cut(s)	43, 335, 556
NspI	RCATGY	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	257
PciI	ACATGT	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	109, 380, 584
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	554
PscI	ACATGT	1 cut(s)	297
PshBI	ATTAAT	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	554
PspN4I	GGNNCC	3 cut(s)	43, 335, 556
PspPI	GGNCC	4 cut(s)	41, 79, 333, 554
PspPPI	RGGWCCY	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	7 cut(s)	12, 26, 90, 99, 309, 426, 549
Sau3AI	GATC	4 cut(s)	176, 223, 388, 796
Sau96I	GGNCC	4 cut(s)	41, 79, 333, 554
ScaI	AGTACT	1 cut(s)	147
SchI	GAGTC	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	2 cut(s)	419, 556
SfcI	CTRYAG	1 cut(s)	714
Sfr274I	CTCGAG	1 cut(s)	257
SfuI	TTCGAA	1 cut(s)	646
SinI	GGWCC	3 cut(s)	41, 79, 554
SlaI	CTCGAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	2 cut(s)	257, 283
SmoI	CTYRAG	2 cut(s)	257, 283
SsiI	CCGC	2 cut(s)	174, 864
SspI	AATATT	1 cut(s)	885
SspMI	CTAG	2 cut(s)	5, 898
StyI	CCWWGG	1 cut(s)	816
TaqI	TCGA	4 cut(s)	258, 445, 646, 834
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	3 cut(s)	109, 380, 584
Tru1I	TTAA	7 cut(s)	12, 26, 90, 99, 309, 426, 549
Tru9I	TTAA	7 cut(s)	12, 26, 90, 99, 309, 426, 549
TscAI	CASTG	1 cut(s)	366
TspDTI	ATGAA	2 cut(s)	372, 443
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	366
VneI	GTGCAC	1 cut(s)	732
VpaK11BI	GGWCC	3 cut(s)	41, 79, 554
VspI	ATTAAT	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	2 cut(s)	637, 673
XceI	RCATGY	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	257
XspI	CTAG	2 cut(s)	5, 898
ZrmI	AGTACT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.