Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

24879338 .. 24880527

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTGAACGTTCCCAAGACTAAGAAGACCTACTGCAAGAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACCCAATACAAGAAGGGCAAGGATAGTGTTGCTGTTCAGGGAAAGCGTCGTTACGATCGCAAGCAGTCTGGTTATGGTGGACAGACAAAGCCAGTCTTTCACAAGAAGGCAAAGACTACAAAGAAGATTGTGTTGAGGCTCCAGTGCCAGGGATGCAAACATGTATCCCAGCACCCGATCAAGAGGTGCAAGCACTTTGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L44

Protein Analysis

106

Amino Acids

12.02

Weight (kDa)

10.29

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L44	PF00935	19 - 94	1.4e-32	Ribosomal protein L44

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	16, 67
BbsI	GAAGAC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	167, 217
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseNI	ACTGG	2 cut(s)	167, 217
BseYI	CCCAGC	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	130, 252
BspLI	GGNNCC	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	167, 217
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	130, 252
Bst2UI	CCWGG	1 cut(s)	224
BstAPI	GCANNNNNTGC	2 cut(s)	48, 64
BstC8I	GCNNGC	2 cut(s)	137, 266
BstDEI	CTNAG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	233
BstKTI	GATC	2 cut(s)	133, 255
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	130, 252
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 64, 228
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	239
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	137, 266
CseI	GACGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	2 cut(s)	166, 214
CviKI_1	RGCY	2 cut(s)	166, 214
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	132, 254
DpnII	GATC	2 cut(s)	130, 252
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	239
FaiI	YATR	2 cut(s)	150, 237
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 155, 187
FatI	CATG	1 cut(s)	235
FokI	GGATG	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	16, 67
Hpy166II	GTNNAC	2 cut(s)	7, 155
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	2 cut(s)	7, 155
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	4 cut(s)	82, 175, 286, 292
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	5 cut(s)	36, 51, 67, 231, 264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 64, 228
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	130, 252
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	7 cut(s)	98, 129, 180, 209, 230, 236, 257
LweI	GCATC	1 cut(s)	218
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	73, 125
MalI	GATC	2 cut(s)	132, 254
MboI	GATC	2 cut(s)	130, 252
MboII	GAAGA	2 cut(s)	37, 211
MnlI	CCTC	2 cut(s)	204, 252
MseI	TTAA	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	48, 64, 228
NdeII	GATC	2 cut(s)	130, 252
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	239
PciI	ACATGT	1 cut(s)	235
Ple19I	CGATCG	1 cut(s)	133
PscI	ACATGT	1 cut(s)	235
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	222
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	316
Sau3AI	GATC	2 cut(s)	130, 252
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	5 cut(s)	12, 32, 65, 75, 263
SfaNI	GCATC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspRI	CASTG	1 cut(s)	224
XceI	RCATGY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.