Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

9108491 .. 9110660

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTGACAATGGAGTTGTCTTCTGTGTATTTAGGTTTCAGTGTTACAGCTGGAATTGCTGGTAATGTCTTTGCATTTGTGTTGTTTGTCTCACCAATACCAACATTTAAGAGAATCATCCGAAACAAGTCAACGGAACAATTCTCAGGATTGCCTTACATATATGCCTTTCTGAATTGCTTGATATGCCTCTGGTATGGCTCGCCTGCCGTGAATACTGGGATCATATGGGTGGCTACAGTCAATTCATTTGGGGCAGTTTTCCAGTTAATCTACATAAGCATTTTCATCGCTTATGCTGAAAAAGAAATTAAGGTGAGGATGCTGGGATTGCTACTGGTAGTTCTTGCTATTTTTGGATTGATAGTCTATGTGAGCTTAGAAGTTTTAGACTATGATGGAAGGCAGATATTTGTCGGATATTTGAGTGTCTTTTCACTTATCTCAATGTTTGCTTCGCCGCTGTTTATCATAAAATTGGTGATAAAAACAAGGAGCGTCGAGTTCATGCCATTGTATCTTTCTCTTGCGACCTTCTTGATGAGTCTCTCTTTCTCTGCATACGGAGTGTTCAAGGAAGATCCATTCCTATATGTTCCGAATGGTATTGGAACAATTTTGGCTATTGTCCAATTGGCTTTGTACTTCTACTACAGCAGTCAATCTAAGAAAGACTTGAGAGAACCCTTGATAGTTACATATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

235

Amino Acids

26.38

Weight (kDa)

8.74

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 103	2.9e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 222	1.8e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	461
AclWI	GGATC	2 cut(s)	230, 575
AfaI	GTAC	1 cut(s)	644
AgsI	TTSAA	1 cut(s)	574
AluBI	AGCT	2 cut(s)	50, 378
AluI	AGCT	2 cut(s)	50, 378
Alw26I	GTCTC	2 cut(s)	94, 551
AlwI	GGATC	2 cut(s)	230, 575
AsuHPI	GGTGA	3 cut(s)	84, 328, 493
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BcoDI	GTCTC	2 cut(s)	94, 551
BfmI	CTRYAG	2 cut(s)	237, 652
BisI	GCNGC	1 cut(s)	461
BlsI	GCNGC	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	697
Bse1I	ACTGG	3 cut(s)	223, 265, 342
BseGI	GGATG	2 cut(s)	117, 327
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	3 cut(s)	223, 265, 342
BseYI	CCCAGC	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	94, 551
Bsp143I	GATC	2 cut(s)	222, 580
BspACI	CCGC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	158
BspPI	GGATC	2 cut(s)	230, 575
BsrI	ACTGG	3 cut(s)	223, 265, 342
BssMI	GATC	2 cut(s)	222, 580
Bst4CI	ACNGT	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	203, 207
BstDEI	CTNAG	3 cut(s)	145, 379, 666
BstF5I	GGATG	2 cut(s)	117, 327
BstKTI	GATC	2 cut(s)	225, 583
BstMAI	GTCTC	2 cut(s)	94, 551
BstMBI	GATC	2 cut(s)	222, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
BstSFI	CTRYAG	2 cut(s)	237, 652
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	117, 327
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	203, 207
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	1 cut(s)	508
CviJI	RGCY	6 cut(s)	50, 201, 236, 378, 623, 638
CviKI_1	RGCY	6 cut(s)	50, 201, 236, 378, 623, 638
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	3 cut(s)	145, 379, 666
DpnI	GATC	2 cut(s)	224, 582
DpnII	GATC	2 cut(s)	222, 580
FaeI	CATG	1 cut(s)	511
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FatI	CATG	1 cut(s)	507
FauNDI	CATATG	2 cut(s)	227, 700
Fnu4HI	GCNGC	1 cut(s)	461
FokI	GGATG	2 cut(s)	104, 334
Fsp4HI	GCNGC	1 cut(s)	461
GluI	GCNGC	1 cut(s)	461
GsaI	CCCAGC	1 cut(s)	329
HgaI	GACGC	1 cut(s)	487
Hin1II	CATG	1 cut(s)	511
HincII	GTYRAC	2 cut(s)	6, 132
HindII	GTYRAC	2 cut(s)	6, 132
HinfI	GANTC	2 cut(s)	114, 544
HphI	GGTGA	3 cut(s)	84, 328, 493
Hpy166II	GTNNAC	2 cut(s)	6, 132
Hpy188I	TCNGA	4 cut(s)	122, 174, 419, 600
Hpy188III	TCNNGA	2 cut(s)	147, 538
Hpy8I	GTNNAC	2 cut(s)	6, 132
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	2 cut(s)	396, 544
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	74, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
HpyF3I	CTNAG	3 cut(s)	145, 379, 666
Hsp92II	CATG	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	222, 580
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	9 cut(s)	36, 45, 132, 178, 204, 219, 278, 311, 323
LweI	GCATC	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	43, 694
MalI	GATC	2 cut(s)	224, 582
MboI	GATC	2 cut(s)	222, 580
MboII	GAAGA	2 cut(s)	12, 590
MfeI	CAATTG	1 cut(s)	632
MflI	RGATCY	1 cut(s)	580
MluCI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	2 cut(s)	200, 312
MseI	TTAA	3 cut(s)	108, 269, 312
MslI	CAYNNNNRTG	2 cut(s)	230, 703
MspA1I	CMGCKG	2 cut(s)	50, 463
MunI	CAATTG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	56, 186, 331
NdeI	CATATG	2 cut(s)	227, 700
NdeII	GATC	2 cut(s)	222, 580
NlaIII	CATG	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	462
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PspFI	CCCAGC	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	2 cut(s)	230, 703
SaqAI	TTAA	3 cut(s)	108, 269, 312
SatI	GCNGC	1 cut(s)	461
Sau3AI	GATC	2 cut(s)	222, 580
SchI	GAGTC	1 cut(s)	553
SetI	ASST	5 cut(s)	37, 52, 318, 380, 536
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	2 cut(s)	237, 652
SmiMI	CAYNNNNRTG	2 cut(s)	230, 703
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
SsiI	CCGC	1 cut(s)	461
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	501
TasI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	3 cut(s)	108, 269, 312
Tru9I	TTAA	3 cut(s)	108, 269, 312
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	237, 277, 496
TspGWI	ACGGA	2 cut(s)	149, 579
TspRI	CASTG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.