Rh7AG012500

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001647
Physical Location & Seq
Forward (+)
841959 .. 843510
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG012500.1

Sequence Viewer

Length: 513 bp
ATGATGATGGCAGTTGCTCTGCTCTGCACACTATTACGGAACACTGTTCTTTTGATTTACAGATGTCCTGGTTTTTTTTTAGTGATGGTTATTGCATTGTTTGGGTTTGGTTGGATTACTGATGTCCGGTTTCATGTTGCTCTATTTTGTTTTGGTTCTTTGAGCATTGATCGTAGCTTGGGGTTTTGGTGTTTTCAGGTGAACGTTCCGAAGACAAAGAAGACCTACTGCAAGAGCAAGGAGTGCAAAAAGCACACCTTGCACAAAGTCACACAATACAAGAAAGGAAAGGACAGCCTTGCTGCTCAGGGAAAGCGTCGTTATGATCGTAAGCAATCGGGTTATGGAGGTCAGACCAAGCCGGTGTTTCACAAGAAGGCCAAAACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATGTGTCGCAGCACCCAATAAAGAGGTGCAAGCATTTTGAGATTGGAGGAGACAAGAAGGGCAAGGGAACCTCTCTTTTCTAG

Protein Analysis

170

Amino Acids

19.43

Weight (kDa)

10.14

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L44 PF00935 84 - 159 5.3e-33 Ribosomal protein L44
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 418
AjnI CCWGG 2 cut(s) 67, 417
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 474
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 302, 439
AsuHPI GGTGA 1 cut(s) 211
BbsI GAAGAC 2 cut(s) 218, 227
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 2 cut(s) 289, 451
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 69, 419
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 1 cut(s) 511
BisI GCNGC 2 cut(s) 303, 440
BlsI GCNGC 2 cut(s) 304, 441
Bme1390I CCNGG 2 cut(s) 69, 419
BmiI GGNNCC 2 cut(s) 410, 499
BmrFI CCNGG 2 cut(s) 69, 419
BpiI GAAGAC 2 cut(s) 218, 227
Bpu10I CCTNAGC 2 cut(s) 306, 404
BsaJI CCNNGG 1 cut(s) 418
BsaWI WCCGGW 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse118I RCCGGY 1 cut(s) 361
BseBI CCWGG 2 cut(s) 69, 419
BseDI CCNNGG 1 cut(s) 418
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMII CTCAG 2 cut(s) 320, 395
BseRI GAGGAG 1 cut(s) 492
BseXI GCAGC 2 cut(s) 289, 451
BsgI GTGCAG 1 cut(s) 10
BshFI GGCC 1 cut(s) 380
BsiSI CCGG 2 cut(s) 127, 362
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 1 cut(s) 474
BsnI GGCC 1 cut(s) 380
Bsp143I GATC 2 cut(s) 169, 325
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 2 cut(s) 319, 396
BspLI GGNNCC 2 cut(s) 410, 499
BsrFI RCCGGY 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 2 cut(s) 169, 325
Bst2UI CCWGG 2 cut(s) 69, 419
Bst4CI ACNGT 1 cut(s) 46
BstAPI GCANNNNNTGC 2 cut(s) 243, 259
BstC8I GCNNGC 2 cut(s) 428, 461
BstDEI CTNAG 2 cut(s) 306, 404
BstKTI GATC 2 cut(s) 172, 328
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 2 cut(s) 169, 325
BstMWI GCNNNNNNNGC 4 cut(s) 243, 259, 423, 436
BstNI CCWGG 2 cut(s) 69, 419
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 67, 417
BstV1I GCAGC 2 cut(s) 289, 451
BstV2I GAAGAC 2 cut(s) 218, 227
BsuRI GGCC 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 428, 461
Cfr10I RCCGGY 1 cut(s) 361
CseI GACGC 1 cut(s) 305
CviAII CATG 2 cut(s) 134, 431
CviJI RGCY 5 cut(s) 177, 297, 361, 380, 409
CviKI_1 RGCY 5 cut(s) 177, 297, 361, 380, 409
DdeI CTNAG 2 cut(s) 306, 404
DpnI GATC 2 cut(s) 171, 327
DpnII GATC 2 cut(s) 169, 325
EcoRII CCWGG 2 cut(s) 67, 417
FaeI CATG 2 cut(s) 137, 434
FaiI YATR 4 cut(s) 135, 324, 345, 432
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 2 cut(s) 133, 430
Fnu4HI GCNGC 2 cut(s) 303, 440
Fsp4HI GCNGC 2 cut(s) 303, 440
FspBI CTAG 1 cut(s) 511
GluI GCNGC 2 cut(s) 303, 440
HaeIII GGCC 1 cut(s) 380
HapII CCGG 2 cut(s) 127, 362
HgaI GACGC 1 cut(s) 305
Hin1II CATG 2 cut(s) 137, 434
HpaII CCGG 2 cut(s) 127, 362
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 210, 354
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 370, 481
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 7 cut(s) 27, 95, 231, 246, 262, 426, 459
HpyF10VI GCNNNNNNNGC 4 cut(s) 243, 259, 423, 436
HpyF3I CTNAG 2 cut(s) 306, 404
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 2 cut(s) 137, 434
Kzo9I GATC 2 cut(s) 169, 325
LmnI GCTCC 1 cut(s) 414
LpnPI CCDG 8 cut(s) 54, 81, 140, 182, 293, 375, 404, 431
Lsp1109I GCAGC 2 cut(s) 289, 451
MaeI CTAG 1 cut(s) 511
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 171, 327
MboI GATC 2 cut(s) 169, 325
MboII GAAGA 3 cut(s) 223, 232, 406
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 5 cut(s) 341, 399, 447, 470, 511
MspI CCGG 2 cut(s) 127, 362
MspR9I CCNGG 2 cut(s) 69, 419
MvaI CCWGG 2 cut(s) 69, 419
MwoI GCNNNNNNNGC 4 cut(s) 243, 259, 423, 436
NdeII GATC 2 cut(s) 169, 325
NlaIII CATG 2 cut(s) 137, 434
NlaIV GGNNCC 2 cut(s) 410, 499
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 434
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PkrI GCNGC 2 cut(s) 304, 441
Psp1406I AACGTT 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 67, 417
PspGI CCWGG 2 cut(s) 67, 417
PspN4I GGNNCC 2 cut(s) 410, 499
SatI GCNGC 2 cut(s) 303, 440
Sau3AI GATC 2 cut(s) 169, 325
ScrFI CCNGG 2 cut(s) 69, 419
SetI ASST 8 cut(s) 179, 201, 207, 227, 260, 352, 458, 503
SspMI CTAG 1 cut(s) 511
StyD4I CCNGG 2 cut(s) 67, 417
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 207
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 302, 439
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 434
XspI CTAG 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.