FvH4_3g06470

Bidirectional sugar transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
3718352 .. 3720903
2552 bp
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UTR
Exon/CDS
Intron
FvH4_3g06470.t1

Sequence Viewer

Length: 705 bp
ATGTTGCCAATGGAGTTGTCTTCTGTGTATTTAGGTTGCAGTGATGCAGCTGGAATTGCTGGTAATATTTTTGCATTTGTGTTGTTTGTCTCACCGATACCAACATTTAAGAGAATCATCAGAAACAAGTCAACGGAACAATTTTCAGGATTGCCTTACATATATGCCTTTCTGAATTGCTTGATATGCCTCTGGTATGGCATGCCTGTTGTTAAGACTGGGATCATATTGGTGGCTACAGTCAATTCATTTGGAGCAGTTTTCCAGTTGATCTACATAAGCATATACATCGCTCATGCTGAAAAAGAAATTAAGGTGAGGATGCTGGGATTGTTACTGGTAGTTCTTGCTATTTTTGGATTGATAGTCTTTGTGAGCTTAAGAGTTTTAGACTATGATGAAAGGCAAACATTTGTCGGATATTTGAGTGTTGTTTCACTTATCTCAATGTTCGCTTCACCACTGTTTATCATAAAATTGGTGATCAAAACAAGGAGCGTCGAGTTCATGCCATTCTATCTTTCACTTGCAACCTTCTTGATGAGCTTCTCTTTCGCTGCATACGGATTGTTCAAGGAAGATCCATTCCTATATGTTCCAAATGGTATTGGAACAATTTTGGCTATTGTTCAGTTGGCTTTGTACTTATACTACAACAGTATATCTAAAAAGGACTTGAGAGAACCCCTGATTACATATGTCTGA

Protein Analysis

235

Amino Acids

26.3

Weight (kDa)

8.87

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 18 - 102 3.7e-19 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 138 - 219 3e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 230, 575
AfaI GTAC 1 cut(s) 644
AflII CTTAAG 1 cut(s) 379
AgsI TTSAA 1 cut(s) 574
AluBI AGCT 3 cut(s) 50, 378, 546
AluI AGCT 3 cut(s) 50, 378, 546
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 2 cut(s) 230, 575
ApeKI GCWGC 2 cut(s) 47, 557
AsuHPI GGTGA 4 cut(s) 84, 328, 450, 493
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 59, 544
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BclI TGATCA 1 cut(s) 483
BcoDI GTCTC 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 237
BfrI CTTAAG 1 cut(s) 379
BisI GCNGC 2 cut(s) 48, 558
BlsI GCNGC 2 cut(s) 49, 559
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 2 cut(s) 34, 312
BmuI ACTGGG 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 697
Bse1I ACTGG 3 cut(s) 223, 265, 342
BseGI GGATG 1 cut(s) 327
BseNI ACTGG 3 cut(s) 223, 265, 342
BseXI GCAGC 2 cut(s) 59, 544
BseYI CCCAGC 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 94
Bsp143I GATC 4 cut(s) 222, 270, 483, 580
BspPI GGATC 2 cut(s) 230, 575
BspTI CTTAAG 1 cut(s) 379
BsrI ACTGG 3 cut(s) 223, 265, 342
BssMI GATC 4 cut(s) 222, 270, 483, 580
Bst4CI ACNGT 3 cut(s) 241, 465, 659
BstAFI CTTAAG 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 203
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 4 cut(s) 225, 273, 486, 583
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 4 cut(s) 222, 270, 483, 580
BstMWI GCNNNNNNNGC 2 cut(s) 56, 186
BstNSI RCATGY 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 59, 544
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 46, 461
Cac8I GCNNGC 1 cut(s) 203
CseI GACGC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 643
CviAII CATG 3 cut(s) 202, 296, 508
CviJI RGCY 6 cut(s) 50, 236, 378, 546, 623, 638
CviKI_1 RGCY 6 cut(s) 50, 236, 378, 546, 623, 638
CviQI GTAC 1 cut(s) 643
DpnI GATC 4 cut(s) 224, 272, 485, 582
DpnII GATC 4 cut(s) 222, 270, 483, 580
FaeI CATG 3 cut(s) 205, 299, 511
FatI CATG 3 cut(s) 201, 295, 507
FauNDI CATATG 1 cut(s) 697
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 48, 558
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 2 cut(s) 48, 558
GluI GCNGC 2 cut(s) 48, 558
GsaI CCCAGC 1 cut(s) 329
HgaI GACGC 1 cut(s) 487
Hin1II CATG 3 cut(s) 205, 299, 511
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 1 cut(s) 114
HphI GGTGA 4 cut(s) 84, 328, 450, 493
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 4 cut(s) 122, 174, 419, 704
Hpy188III TCNNGA 2 cut(s) 147, 538
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 3 cut(s) 241, 465, 659
HpyCH4V TGCA 5 cut(s) 39, 47, 74, 530, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 186
Hsp92II CATG 3 cut(s) 205, 299, 511
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 4 cut(s) 222, 270, 483, 580
LmnI GCTCC 2 cut(s) 254, 495
Lsp1109I GCAGC 2 cut(s) 59, 544
LweI GCATC 2 cut(s) 34, 312
MaeIII GTNAC 1 cut(s) 333
MalI GATC 4 cut(s) 224, 272, 485, 582
MboI GATC 4 cut(s) 222, 270, 483, 580
MboII GAAGA 2 cut(s) 12, 590
MflI RGATCY 1 cut(s) 580
MluCI AATT 7 cut(s) 54, 140, 175, 244, 309, 476, 615
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 2 cut(s) 200, 312
MseI TTAA 4 cut(s) 108, 213, 312, 380
MslI CAYNNNNRTG 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 379
MwoI GCNNNNNNNGC 2 cut(s) 56, 186
NdeI CATATG 1 cut(s) 697
NdeII GATC 4 cut(s) 222, 270, 483, 580
NlaIII CATG 3 cut(s) 205, 299, 511
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 2 cut(s) 49, 559
PspFI CCCAGC 1 cut(s) 325
PsuI RGATCY 1 cut(s) 580
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 4 cut(s) 108, 213, 312, 380
SatI GCNGC 2 cut(s) 48, 558
Sau3AI GATC 4 cut(s) 222, 270, 483, 580
SetI ASST 6 cut(s) 37, 52, 318, 380, 536, 548
SfaNI GCATC 2 cut(s) 34, 312
SfcI CTRYAG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 379, 676
SmoI CTYRAG 2 cut(s) 379, 676
SphI GCATGC 1 cut(s) 205
Sse9I AATT 7 cut(s) 54, 140, 175, 244, 309, 476, 615
SspI AATATT 1 cut(s) 67
TaaI ACNGT 3 cut(s) 241, 465, 659
TaqI TCGA 1 cut(s) 501
TasI AATT 7 cut(s) 54, 140, 175, 244, 309, 476, 615
TatI WGTACW 1 cut(s) 642
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 4 cut(s) 108, 213, 312, 380
Tru9I TTAA 4 cut(s) 108, 213, 312, 380
TscAI CASTG 2 cut(s) 46, 468
TseI GCWGC 2 cut(s) 47, 557
TspDTI ATGAA 3 cut(s) 237, 414, 496
TspGWI ACGGA 2 cut(s) 149, 579
TspRI CASTG 2 cut(s) 46, 468
Vha464I CTTAAG 1 cut(s) 379
XceI RCATGY 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.