Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

24886303 .. 24888010

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTGTCAACTGAACTGTCTTCTGTTTATCAAACTTTCACCGATGCCGCCGGCGTTCTTGGGAATCTCTTTGCCTTCGGATTGTATCTGTCACCAATGTCAACATTTAATAGAATTATCAGAAACAGGTCGACAGAACAATTTTCTGGAATGCCTTACATATATGGCCTTATGAATTGCTTGATATGTTGCTGGTATGGAATGCCTATTGTGAAGAGTGGCATTATACTGGTGGCTACAGTCAATTCAGTTGGGACTGTTTTCCAGTTAGTCTACTTGAGCATTTTCATCTCTTACGCCGAAAGAGCGGTTAAGATAAGGATGTTGGCATTGTTAATTGCAGTTTTTGTTATATTTGCGTCCATTGTCTTTGTCAGCTTAAGTTGTTTTGACTACAATGGAAGGCAATTCTTCGTCGGATACTTGAGTATTGCTTCACTAATTTTCATGTATGGTTCGCCATTGATTGTCATTAATTTGGTGATCAAAACAAAAAGCGTTGAGTTCATGCCGTTTAATCTTTCTTTTGCAACTTTCTTAGTGAGTTTCTCATTCACTACATACGGAGTGTTCAAGATGGACCCTTTTCTCTATATGCCAAATGGTATTGGCACACTTTTAGCCCTTGTACAGTTGATTCTGTACTGCCACTACAACAATTCATCTAAAGAAGACACGGAAGAAGAAGAAGAACCATTGATGGCTGAATATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

239

Amino Acids

26.8

Weight (kDa)

5.15

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	308
AccI	GTMKAC	2 cut(s)	131, 273
AciI	CCGC	2 cut(s)	48, 308
AfaI	GTAC	2 cut(s)	630, 644
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	1 cut(s)	574
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
AoxI	GGCC	1 cut(s)	166
AseI	ATTAAT	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	580
AsuHPI	GGTGA	3 cut(s)	31, 84, 493
AvaII	GGWCC	1 cut(s)	580
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BbsI	GAAGAC	2 cut(s)	12, 678
BccI	CCATC	2 cut(s)	571, 694
BceAI	ACGGC	1 cut(s)	496
BciVI	GTATCC	1 cut(s)	413
BclI	TGATCA	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	1 cut(s)	582
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	2 cut(s)	12, 678
BpuEI	CTTGAG	2 cut(s)	298, 445
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	234, 265
BseGI	GGATG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	234, 265
BshFI	GGCC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	2 cut(s)	156, 207
BsnI	GGCC	1 cut(s)	168
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	1 cut(s)	483
BspACI	CCGC	2 cut(s)	48, 308
BspANI	GGCC	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	582
BspTI	CTTAAG	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	50
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	234, 265
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	1 cut(s)	483
Bst4CI	ACNGT	4 cut(s)	18, 241, 259, 633
Bst6I	CTCTTC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	379
BstAUI	TGTACA	1 cut(s)	628
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	538
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	486
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	237
BstV2I	GAAGAC	2 cut(s)	12, 678
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	580
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	629, 643
CviAII	CATG	2 cut(s)	448, 508
CviJI	RGCY	5 cut(s)	168, 236, 378, 623, 704
CviKI_1	RGCY	5 cut(s)	168, 236, 378, 623, 704
CviQI	GTAC	2 cut(s)	629, 643
DdeI	CTNAG	1 cut(s)	538
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	580
FaeI	CATG	2 cut(s)	451, 511
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	447, 507
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	2 cut(s)	131, 273
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	451, 511
HincII	GTYRAC	3 cut(s)	9, 102, 132
HindII	GTYRAC	3 cut(s)	9, 102, 132
HinfI	GANTC	2 cut(s)	64, 637
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	3 cut(s)	31, 84, 493
Hpy166II	GTNNAC	4 cut(s)	9, 102, 132, 274
Hpy188I	TCNGA	3 cut(s)	80, 122, 419
Hpy188III	TCNNGA	2 cut(s)	147, 574
Hpy8I	GTNNAC	4 cut(s)	9, 102, 132, 274
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	85, 396
HpyCH4III	ACNGT	4 cut(s)	18, 241, 259, 633
HpyCH4V	TGCA	2 cut(s)	341, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	1 cut(s)	538
Hsp92II	CATG	2 cut(s)	451, 511
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	1 cut(s)	483
LpnPI	CCDG	6 cut(s)	64, 112, 132, 178, 215, 278
LweI	GCATC	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	1 cut(s)	485
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	1 cut(s)	483
MboII	GAAGA	8 cut(s)	12, 226, 403, 683, 692, 695, 698, 701
MluCI	AATT	9 cut(s)	114, 140, 175, 244, 336, 407, 441, 475, 658
MmeI	TCCRAC	1 cut(s)	397
MreI	CGCCGGCG	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	6 cut(s)	108, 312, 335, 380, 474, 516
MspCI	CTTAAG	1 cut(s)	379
MspI	CCGG	1 cut(s)	51
Mva1269I	GAATGC	2 cut(s)	156, 207
MwoI	GCNNNNNNNGC	1 cut(s)	305
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	483
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	451, 511
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	90
PctI	GAATGC	2 cut(s)	156, 207
PdiI	GCCGGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	64, 637
PkrI	GCNGC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	580
RsaI	GTAC	2 cut(s)	630, 644
RsaNI	GTAC	2 cut(s)	629, 643
SalI	GTCGAC	1 cut(s)	130
SaqAI	TTAA	6 cut(s)	108, 312, 335, 380, 474, 516
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	483
Sau96I	GGNCC	1 cut(s)	580
SetI	ASST	2 cut(s)	131, 380
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	237
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	580
SmlI	CTYRAG	3 cut(s)	277, 379, 424
SmoI	CTYRAG	3 cut(s)	277, 379, 424
Sse9I	AATT	9 cut(s)	114, 140, 175, 244, 336, 407, 441, 475, 658
SsiI	CCGC	2 cut(s)	48, 308
TaaI	ACNGT	4 cut(s)	18, 241, 259, 633
TaqI	TCGA	1 cut(s)	131
TasI	AATT	9 cut(s)	114, 140, 175, 244, 336, 407, 441, 475, 658
TatI	WGTACW	2 cut(s)	628, 642
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	64, 637
Tru1I	TTAA	6 cut(s)	108, 312, 335, 380, 474, 516
Tru9I	TTAA	6 cut(s)	108, 312, 335, 380, 474, 516
TseFI	GTSAC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	5 cut(s)	188, 277, 436, 496, 651
TspGWI	ACGGA	3 cut(s)	579, 692, 702
Vha464I	CTTAAG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	580
VspI	ATTAAT	1 cut(s)	474
XmiI	GTMKAC	2 cut(s)	131, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.