Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Forward (+)

8375333 .. 8376436

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAAAAGGCTAAGACCACGAAGAAGATTGTTTTGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAGAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L44

Protein Analysis

105

Amino Acids

12.13

Weight (kDa)

10.33

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L44	PF00935	19 - 94	4.3e-34	Ribosomal protein L44

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	107, 228, 244
AsuHPI	GGTGA	2 cut(s)	16, 296
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	94, 215, 256
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BisI	GCNGC	3 cut(s)	108, 229, 245
BlsI	GCNGC	3 cut(s)	109, 230, 246
BpiI	GAAGAC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	94, 215, 256
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	276
BssMI	GATC	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	35, 101, 134
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	233, 266
BstDEI	CTNAG	2 cut(s)	162, 186
BstEII	GGTNACC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 241
BstPI	GGTNACC	1 cut(s)	73
BstV1I	GCAGC	3 cut(s)	94, 215, 256
BstV2I	GAAGAC	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	233, 266
CseI	GACGC	2 cut(s)	110, 236
CviJI	RGCY	4 cut(s)	166, 185, 214, 228
CviKI_1	RGCY	4 cut(s)	166, 185, 214, 228
DdeI	CTNAG	2 cut(s)	162, 186
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
FaiI	YATR	3 cut(s)	60, 129, 150
FalI	AAGNNNNNCTT	4 cut(s)	87, 119, 155, 187
Fnu4HI	GCNGC	3 cut(s)	108, 229, 245
Fsp4HI	GCNGC	3 cut(s)	108, 229, 245
GluI	GCNGC	3 cut(s)	108, 229, 245
HgaI	GACGC	2 cut(s)	110, 236
HphI	GGTGA	2 cut(s)	16, 296
Hpy166II	GTNNAC	2 cut(s)	7, 137
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	2 cut(s)	256, 274
Hpy8I	GTNNAC	2 cut(s)	7, 137
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	82, 286
HpyCH4III	ACNGT	3 cut(s)	35, 101, 134
HpyCH4V	TGCA	4 cut(s)	51, 67, 231, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 241
HpyF3I	CTNAG	2 cut(s)	162, 186
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	2 cut(s)	129, 180
Lsp1109I	GCAGC	3 cut(s)	94, 215, 256
MaeIII	GTNAC	2 cut(s)	73, 284
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	3 cut(s)	163, 208, 211
MnlI	CCTC	2 cut(s)	204, 252
MseI	TTAA	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	64, 241
NdeII	GATC	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PctI	GAATGC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	109, 230, 246
PspEI	GGTNACC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	3 cut(s)	108, 229, 245
Sau3AI	GATC	1 cut(s)	276
SetI	ASST	3 cut(s)	75, 230, 263
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
TaaI	ACNGT	3 cut(s)	35, 101, 134
TaqI	TCGA	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	107, 228, 244
Tsp45I	GTSAC	1 cut(s)	284
TspRI	CASTG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.