Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

42452848 .. 42454738

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1293100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTGCCGACTGGACTGTTTTCTGTTTATTTAGGTTGGAGTACTGCAGCCGGCATTGCAGGGAATATCTTTGCCTTTGTGTTATTTGTGTCACCAATACCAACATTTAAGAGAATTGTCAAAACTAAGTCAACAGAACAATTTTCTGGATTGCCTTACATATATGCACTTTTGAACTGCTTGATATGCTCCTGGTATGGCATGCCTGCTGTGAAAACTGGGATTATACTGGTGGCTACAGTCAATTCAATCGGGGCGGTTTTCCAGTTTGTCTACTTAAGCATTTTCATTAGGCACGCCGAAAGAGCGATCAAGCTGAGGATGATGGGATTGATAGCGGCAGTTATTGTTGTGTTTGCGTTCGTTGTCTTTGTGACCTTGGGACTTTTAGACTACGATGAGAGGCAAACGTTCGTCGGATACCTGAGTGTTGCTTCGCTCATCTCAATGTTTGCTTCGCCGCTGTTTATCATAAAATTGGTGATCAAAACAAGGAGTGTCGAGTTCATGCCATTTAATCTTTCTCTCGCGACGTTTTTGATGAGTCTCTCTTTCTCTGCATATGGAGTGCTCAAGGAGGACCCTTTCCTCTATATCCCAAACGGTATTGGAACAATTTTAGGGCTTGTCCAGTTAGCTCTGTACTCCTACTACAGCAACATATCCGAAGATGCCTCAAGAGAGCCATTGATAGTTTCATACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

25.95

Weight (kDa)

9.02

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 99	6.9e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 220	8.6e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	530
AciI	CCGC	3 cut(s)	257, 338, 461
AclI	AACGTT	1 cut(s)	410
AfaI	GTAC	2 cut(s)	43, 644
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	175, 249
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	2 cut(s)	316, 638
AluI	AGCT	2 cut(s)	316, 638
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	580
AsuHPI	GGTGA	2 cut(s)	84, 493
AvaII	GGWCC	1 cut(s)	580
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
Bbv12I	GWGCWC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	413
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	551
BfmI	CTRYAG	3 cut(s)	45, 237, 652
BfrI	CTTAAG	1 cut(s)	277
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	48, 339, 461
BlsI	GCNGC	3 cut(s)	49, 340, 462
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	193
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	661
BmuI	ACTGGG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	557, 661
BsaJI	CCNNGG	1 cut(s)	378
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	5 cut(s)	16, 223, 234, 265, 631
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	308, 416
BseNI	ACTGG	5 cut(s)	16, 223, 234, 265, 631
BseXI	GCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	309, 483
Bsp68I	TCGCGA	1 cut(s)	530
BspACI	CCGC	3 cut(s)	257, 338, 461
BspCNI	CTCAG	2 cut(s)	309, 417
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	5 cut(s)	16, 223, 234, 265, 631
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	309, 483
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	3 cut(s)	18, 241, 605
BstAFI	CTTAAG	1 cut(s)	277
BstC8I	GCNNGC	4 cut(s)	52, 203, 207, 297
BstDEI	CTNAG	3 cut(s)	126, 317, 425
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	530
BstKTI	GATC	2 cut(s)	312, 486
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	2 cut(s)	309, 483
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 186, 305
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	3 cut(s)	45, 237, 652
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	413
BtsCI	GGATG	1 cut(s)	327
BtuMI	TCGCGA	1 cut(s)	530
Cac8I	GCNNGC	4 cut(s)	52, 203, 207, 297
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	580
Csp6I	GTAC	2 cut(s)	42, 643
CviAII	CATG	2 cut(s)	202, 508
CviJI	RGCY	6 cut(s)	50, 236, 316, 625, 638, 685
CviKI_1	RGCY	6 cut(s)	50, 236, 316, 625, 638, 685
CviQI	GTAC	2 cut(s)	42, 643
DdeI	CTNAG	3 cut(s)	126, 317, 425
DpnI	GATC	2 cut(s)	311, 485
DpnII	GATC	2 cut(s)	309, 483
Eco130I	CCWWGG	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	2 cut(s)	205, 511
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	2 cut(s)	201, 507
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	48, 339, 461
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	3 cut(s)	48, 339, 461
GluI	GCNGC	3 cut(s)	48, 339, 461
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	205, 511
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	544
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	84, 493
Hpy166II	GTNNAC	2 cut(s)	132, 274
Hpy188I	TCNGA	2 cut(s)	419, 667
Hpy188III	TCNNGA	3 cut(s)	147, 529, 678
Hpy8I	GTNNAC	2 cut(s)	132, 274
Hpy99I	CGWCG	2 cut(s)	419, 535
HpyCH4III	ACNGT	3 cut(s)	18, 241, 605
HpyCH4IV	ACGT	2 cut(s)	410, 533
HpyCH4V	TGCA	4 cut(s)	47, 59, 167, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 186, 305
HpyF3I	CTNAG	3 cut(s)	126, 317, 425
HpySE526I	ACGT	2 cut(s)	410, 533
Hsp92II	CATG	2 cut(s)	205, 511
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	309, 483
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	661
MaeII	ACGT	2 cut(s)	410, 533
MaeIII	GTNAC	2 cut(s)	90, 373
MalI	GATC	2 cut(s)	311, 485
MboI	GATC	2 cut(s)	309, 483
MboII	GAAGA	1 cut(s)	680
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	5 cut(s)	114, 140, 244, 476, 615
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	2 cut(s)	17, 397
MnlI	CCTC	5 cut(s)	312, 396, 571, 599, 685
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	3 cut(s)	108, 278, 516
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	463
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	3 cut(s)	56, 186, 305
NaeI	GCCGGC	1 cut(s)	52
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	2 cut(s)	309, 483
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	205, 511
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	90, 373
NruI	TCGCGA	1 cut(s)	530
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PdiI	GCCGGC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	49, 340, 462
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PpuMI	RGGWCCY	1 cut(s)	580
Psp1406I	AACGTT	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	580
PspPPI	RGGWCCY	1 cut(s)	580
PstI	CTGCAG	1 cut(s)	49
RruI	TCGCGA	1 cut(s)	530
RsaI	GTAC	2 cut(s)	43, 644
RsaNI	GTAC	2 cut(s)	42, 643
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	108, 278, 516
SatI	GCNGC	3 cut(s)	48, 339, 461
Sau3AI	GATC	2 cut(s)	309, 483
Sau96I	GGNCC	1 cut(s)	580
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	573
SetI	ASST	7 cut(s)	37, 318, 380, 413, 426, 536, 640
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	3 cut(s)	45, 237, 652
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	3 cut(s)	277, 572, 676
SmoI	CTYRAG	3 cut(s)	277, 572, 676
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	5 cut(s)	114, 140, 244, 476, 615
SsiI	CCGC	3 cut(s)	257, 338, 461
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	3 cut(s)	18, 241, 605
TaiI	ACGT	2 cut(s)	413, 536
TaqI	TCGA	1 cut(s)	501
TasI	AATT	5 cut(s)	114, 140, 244, 476, 615
TatI	WGTACW	2 cut(s)	41, 642
TauI	GCSGC	2 cut(s)	341, 463
Tru1I	TTAA	3 cut(s)	108, 278, 516
Tru9I	TTAA	3 cut(s)	108, 278, 516
TseFI	GTSAC	2 cut(s)	90, 373
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	2 cut(s)	90, 373
TspDTI	ATGAA	3 cut(s)	277, 496, 687
Vha464I	CTTAAG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	580
XceI	RCATGY	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.