Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

42442248 .. 42443754

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1293000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCCTCTAGGGTTCTTGTTACAAGCTTCAGCTGCTCATTTCTGTATCGACGCCGCGGCAAATCCACCATGATTGCATTAATCCGTTTGGTGAACGTTCCCAAGACAAAGAAGACCTACTGCAAGAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACACAATACAAGAAGGGCAAGGATAGTCTTGCTGCTCAGGGAAAGCGTCGTTACGATCGCAAGCAGTCTGGTTATGGTGGGCAGACAAAACCAGTCTTCCACAAGAAGGCAAAGACTACTAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATGTATCCCAGCACCCGATCAAGAGGTGCAAGCACTTTGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCGCTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L44

Protein Analysis

135

Amino Acids

15.34

Weight (kDa)

10.52

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L44	PF00935	48 - 123	2.9e-33	Ribosomal protein L44

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	55, 57
AclI	AACGTT	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	52
AfiI	CCNNNNNNNGG	2 cut(s)	268, 310
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	2 cut(s)	27, 33
AluI	AGCT	2 cut(s)	27, 33
Alw26I	GTCTC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	33, 194
AseI	ATTAAT	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	103
BbsI	GAAGAC	2 cut(s)	119, 250
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	20, 181
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	4 cut(s)	34, 55, 58, 195
BlsI	GCNGC	4 cut(s)	35, 56, 59, 196
Bme1390I	CCNGG	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	311
BpiI	GAAGAC	2 cut(s)	119, 250
Bpu10I	CCTNAGC	2 cut(s)	198, 296
BsaHI	GRCGYC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	55, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 310
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	55, 310
BseLI	CCNNNNNNNGG	2 cut(s)	268, 310
BseMII	CTCAG	2 cut(s)	212, 287
BseNI	ACTGG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	20, 181
BseYI	CCCAGC	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	268, 310
BsmAI	GTCTC	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	217, 339
BspACI	CCGC	2 cut(s)	55, 57
BspCNI	CTCAG	2 cut(s)	211, 288
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	55, 310
BssMI	GATC	2 cut(s)	217, 339
BssNI	GRCGYC	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	311
BstACI	GRCGYC	1 cut(s)	52
BstAPI	GCANNNNNTGC	2 cut(s)	135, 151
BstC8I	GCNNGC	3 cut(s)	224, 320, 353
BstDEI	CTNAG	3 cut(s)	198, 282, 296
BstDSI	CCRYGG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	220, 342
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	2 cut(s)	217, 339
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 135, 151, 315
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	20, 181
BstV2I	GAAGAC	2 cut(s)	119, 250
BsuI	GTATCC	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	55
BtgZI	GCGATG	1 cut(s)	378
Cac8I	GCNNGC	3 cut(s)	224, 320, 353
Cfr42I	CCGCGG	1 cut(s)	58
CseI	GACGC	2 cut(s)	60, 197
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	2 cut(s)	70, 323
CviJI	RGCY	3 cut(s)	27, 33, 301
CviKI_1	RGCY	3 cut(s)	27, 33, 301
DdeI	CTNAG	3 cut(s)	198, 282, 296
DpnI	GATC	2 cut(s)	219, 341
DpnII	GATC	2 cut(s)	217, 339
Eco57I	CTGAAG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	73, 326
FaiI	YATR	3 cut(s)	71, 237, 324
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	2 cut(s)	69, 322
Fnu4HI	GCNGC	4 cut(s)	34, 55, 58, 195
Fsp4HI	GCNGC	4 cut(s)	34, 55, 58, 195
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	4 cut(s)	34, 55, 58, 195
GsaI	CCCAGC	1 cut(s)	334
HgaI	GACGC	2 cut(s)	60, 197
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	73, 326
HindIII	AAGCTT	1 cut(s)	25
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	54, 213
HpyAV	CCTTC	4 cut(s)	169, 262, 373, 379
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	6 cut(s)	77, 123, 138, 154, 318, 351
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 135, 151, 315
HpyF3I	CTNAG	3 cut(s)	198, 282, 296
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	73, 326
KspI	CCGCGG	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	217, 339
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	6 cut(s)	185, 216, 267, 296, 323, 344
Lsp1109I	GCAGC	2 cut(s)	20, 181
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	19, 160, 212
MalI	GATC	2 cut(s)	219, 341
MboI	GATC	2 cut(s)	217, 339
MboII	GAAGA	3 cut(s)	124, 250, 298
MnlI	CCTC	3 cut(s)	16, 291, 339
MseI	TTAA	1 cut(s)	80
MspA1I	CMGCKG	2 cut(s)	33, 57
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	4 cut(s)	33, 135, 151, 315
NdeII	GATC	2 cut(s)	217, 339
NlaIII	CATG	2 cut(s)	73, 326
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	35, 56, 59, 196
Ple19I	CGATCG	1 cut(s)	220
PshBI	ATTAAT	1 cut(s)	80
Psp1406I	AACGTT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	302
PvuI	CGATCG	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	33
SacII	CCGCGG	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	4 cut(s)	34, 55, 58, 195
Sau3AI	GATC	2 cut(s)	217, 339
ScrFI	CCNGG	1 cut(s)	311
SetI	ASST	7 cut(s)	29, 35, 99, 119, 152, 162, 350
Sfr303I	CCGCGG	1 cut(s)	58
SgrBI	CCGCGG	1 cut(s)	58
SsiI	CCGC	2 cut(s)	55, 57
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	309
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	49
TauI	GCSGC	2 cut(s)	57, 60
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	33, 194
Tsp45I	GTSAC	1 cut(s)	160
TspGWI	ACGGA	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	80
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.