Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

23541968 .. 23543339

Gene Structure 1372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTGAACGTTCCGAAAACAAAGAAGACCTACTGCAAGAGCAAGGAGTGCAAAAAGCACACCTTGCACAAGGTTACCCAATACAAGAAAGGAAAGGATAGCCTTGCCGCTCAGGGAAAGAGGCGTTATGATCGTAAGCAGTCAGGTTATGGAGGGCAGACCAAACCAGTGTTCCACAAGAAGGCAAAAACGACCAAGAAGATTGTTCTGAGGCTCCAATGCCAGGGTTGCAAGCATGTGTCCCAGCACCCGATCAAGAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGGAAGGGAACCTCTCTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L44

Protein Analysis

106

Amino Acids

12.0

Weight (kDa)

10.29

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L44	PF00935	19 - 94	1.4e-33	Ribosomal protein L44

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	110
AciI	CCGC	1 cut(s)	108
AclI	AACGTT	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	181, 223
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
Alw26I	GTCTC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	279
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	215, 304
BmrFI	CCNGG	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 223
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	223
BseLI	CCNNNNNNNGG	2 cut(s)	181, 223
BseMII	CTCAG	2 cut(s)	125, 200
BseNI	ACTGG	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	181, 223
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	130, 252
BspACI	CCGC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	124, 201
BspLI	GGNNCC	2 cut(s)	215, 304
BsrBI	CCGCTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	130, 252
Bst2UI	CCWGG	1 cut(s)	224
BstAPI	GCANNNNNTGC	2 cut(s)	48, 64
BstC8I	GCNNGC	2 cut(s)	233, 266
BstDEI	CTNAG	2 cut(s)	111, 209
BstEII	GGTNACC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	133, 255
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	130, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 64, 228
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	239
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	233, 266
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	2 cut(s)	102, 214
CviKI_1	RGCY	2 cut(s)	102, 214
DdeI	CTNAG	2 cut(s)	111, 209
DpnI	GATC	2 cut(s)	132, 254
DpnII	GATC	2 cut(s)	130, 252
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	239
FaiI	YATR	3 cut(s)	129, 150, 237
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
GsaI	CCCAGC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	15, 210
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	175, 286, 292
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	5 cut(s)	36, 51, 67, 231, 264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 64, 228
HpyF3I	CTNAG	2 cut(s)	111, 209
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	130, 252
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	6 cut(s)	98, 129, 180, 209, 236, 257
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	132, 254
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	2 cut(s)	130, 252
MboII	GAAGA	2 cut(s)	37, 211
MnlI	CCTC	5 cut(s)	114, 146, 204, 252, 316
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	48, 64, 228
NdeII	GATC	2 cut(s)	130, 252
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	2 cut(s)	215, 304
NspI	RCATGY	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	109
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	222
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	215, 304
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	130, 252
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	7 cut(s)	12, 32, 65, 75, 148, 263, 308
SsiI	CCGC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	12
TauI	GCSGC	1 cut(s)	110
TscAI	CASTG	1 cut(s)	174
TspRI	CASTG	1 cut(s)	174
XceI	RCATGY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.