Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Forward (+)

961798 .. 963560

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG012400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGTGAACGTTCCGAAGACAAAGAAGACCTACTGCAAGAACAAGGAGTGCAAAAAGCACACCTTGCACAAAGTCACACAATACAAGAAAGGAAAGGACAGCCTTGCTGCTCAGGGAAAGCGTCGTTATGATCGTAAGCAATCGGGTTATGGAGGTCAGACCAAGCCGGTGTTTCACAAGAAGGTAAAACACATAAATTTATCGGTGCATTCTTTGCGTTCTGGAATTAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L44

Protein Analysis

78

Amino Acids

9.01

Weight (kDa)

10.45

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L44	PF00935	19 - 64	5.4e-18	Ribosomal protein L44

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	23, 32
BbvI	GCAGC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	23, 32
Bpu10I	CCTNAGC	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	166
BssMI	GATC	1 cut(s)	130
BstAPI	GCANNNNNTGC	2 cut(s)	64, 214
BstDEI	CTNAG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 214
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	23, 32
Cfr10I	RCCGGY	1 cut(s)	166
CseI	GACGC	1 cut(s)	110
CviJI	RGCY	2 cut(s)	102, 166
CviKI_1	RGCY	2 cut(s)	102, 166
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
FaiI	YATR	3 cut(s)	129, 150, 194
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	15, 159
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	36, 51, 67, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 214
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	98, 180, 207
Lsp1109I	GCAGC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	28, 37
MluCI	AATT	2 cut(s)	196, 225
MnlI	CCTC	1 cut(s)	146
MseI	TTAA	1 cut(s)	228
MspI	CCGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	64, 214
NdeII	GATC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PctI	GAATGC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	109
Psp1406I	AACGTT	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	130
SetI	ASST	5 cut(s)	12, 32, 65, 157, 186
Sse9I	AATT	2 cut(s)	196, 225
TaiI	ACGT	1 cut(s)	12
TasI	AATT	2 cut(s)	196, 225
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.