Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002365.1

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Forward (+)

190848 .. 194408

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002365.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgttgccaatggagttgtcttctgtgtatttaggtttcagttttgcagctggaattgctggtaatatctttgcatttgtgttgtttgtctcaccaataccaacatttaagagaatcatccgaaacaagtcaacggaacaattctcaggattgccttacatatatgcctttctgaattgcttgatatgcctctggtatggctcgcctgccgtgaatactgggatcatatgggtggctacagtcaattcatttggggcagttttccagttaatctacataagcattttcatcgcttatgctgaaaaagaaattaaggtgaggatgctgggattgctactggtagttctcgctatttttggattgatagtctatgtgagcttaaaagttttagactatgatggaaggcagatatttgtcggatatttgagtgttttttcacttatctcaatgtttgcttcgccgctgtttatcataaaattggtgataaaaacaaggagcgtcgagttcatgccattgtatctttctcttgcaaccttcttgatgagtctctctttctctgcatacggagtgttcaaggaagatccattcctatatgttccgaatggtattggaacaattttggctattgtccaattggctttgtacttctactacagcagtcaatctaagaaagacttgagagaacccttgatagtgaacgttcccaagactaagaagacctactgcaagaacaaggcgtgcaagaagcacaccttgcacaaggttacacagtacaagaagggcaaggacagtcttgctgctcagggaaagcgtcgttacgatcgcaagcagtctggttatggaggtcagaccaagccagtctttcacaagaaggccaagactaccaagaagattgttctaaggctccaatgccagggatgcaagcatgtttctcagcatccaatcaagaggtgcaagcactttgagattggtggagacaagaagggaaagggaacatcgcttttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

335

Amino Acids

37.76

Weight (kDa)

9.89

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	461
AclI	AACGTT	1 cut(s)	699
AclWI	GGATC	2 cut(s)	230, 575
AfaI	GTAC	2 cut(s)	644, 773
AfiI	CCNNNNNNNGG	1 cut(s)	913
AgsI	TTSAA	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	912
AluBI	AGCT	2 cut(s)	50, 378
AluI	AGCT	2 cut(s)	50, 378
Alw26I	GTCTC	3 cut(s)	94, 551, 969
AlwI	GGATC	2 cut(s)	230, 575
AoxI	GGCC	1 cut(s)	873
ApeKI	GCWGC	2 cut(s)	47, 797
AsuHPI	GGTGA	3 cut(s)	84, 328, 493
BbsI	GAAGAC	2 cut(s)	12, 722
BbvI	GCAGC	2 cut(s)	59, 784
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	914
BcoDI	GTCTC	3 cut(s)	94, 551, 969
BfmI	CTRYAG	2 cut(s)	237, 652
BisI	GCNGC	3 cut(s)	48, 461, 798
BlsI	GCNGC	3 cut(s)	49, 462, 799
Bme1390I	CCNGG	1 cut(s)	914
BmiI	GGNNCC	1 cut(s)	905
BmrFI	CCNGG	1 cut(s)	914
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	3 cut(s)	312, 908, 946
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	12, 722
Bpu10I	CCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	697
BsaJI	CCNNGG	1 cut(s)	913
Bsc4I	CCNNNNNNNGG	1 cut(s)	913
Bse1I	ACTGG	4 cut(s)	223, 265, 342, 857
BseBI	CCWGG	1 cut(s)	914
BseDI	CCNNGG	1 cut(s)	913
BseGI	GGATG	4 cut(s)	117, 327, 923, 937
BseLI	CCNNNNNNNGG	1 cut(s)	913
BseMII	CTCAG	3 cut(s)	159, 815, 947
BseNI	ACTGG	4 cut(s)	223, 265, 342, 857
BseXI	GCAGC	2 cut(s)	59, 784
BseYI	CCCAGC	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	1 cut(s)	875
BsiEI	CGRYCG	1 cut(s)	823
BslI	CCNNNNNNNGG	1 cut(s)	913
BsmAI	GTCTC	3 cut(s)	94, 551, 969
BsnI	GGCC	1 cut(s)	875
Bsp143I	GATC	3 cut(s)	222, 580, 820
BspACI	CCGC	1 cut(s)	461
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	3 cut(s)	158, 814, 946
BspLI	GGNNCC	1 cut(s)	905
BspPI	GGATC	2 cut(s)	230, 575
BsrI	ACTGG	4 cut(s)	223, 265, 342, 857
BssECI	CCNNGG	1 cut(s)	913
BssMI	GATC	3 cut(s)	222, 580, 820
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	3 cut(s)	241, 771, 791
BstAPI	GCANNNNNTGC	1 cut(s)	754
BstC8I	GCNNGC	6 cut(s)	203, 207, 739, 827, 923, 956
BstDEI	CTNAG	6 cut(s)	145, 666, 711, 801, 899, 933
BstF5I	GGATG	4 cut(s)	117, 327, 923, 937
BstKTI	GATC	3 cut(s)	225, 583, 823
BstMAI	GTCTC	3 cut(s)	94, 551, 969
BstMBI	GATC	3 cut(s)	222, 580, 820
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 186, 331, 754, 918
BstNI	CCWGG	1 cut(s)	914
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	1 cut(s)	912
BstSFI	CTRYAG	2 cut(s)	237, 652
BstV1I	GCAGC	2 cut(s)	59, 784
BstV2I	GAAGAC	2 cut(s)	12, 722
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	875
BtgZI	GCGATG	2 cut(s)	274, 981
BtsCI	GGATG	4 cut(s)	117, 327, 923, 937
Cac8I	GCNNGC	6 cut(s)	203, 207, 739, 827, 923, 956
CseI	GACGC	2 cut(s)	487, 800
Csp6I	GTAC	2 cut(s)	643, 772
CviAII	CATG	2 cut(s)	508, 926
CviJI	RGCY	9 cut(s)	50, 201, 236, 378, 623, 638, 856, 875, 904
CviKI_1	RGCY	9 cut(s)	50, 201, 236, 378, 623, 638, 856, 875, 904
CviQI	GTAC	2 cut(s)	643, 772
DdeI	CTNAG	6 cut(s)	145, 666, 711, 801, 899, 933
DpnI	GATC	3 cut(s)	224, 582, 822
DpnII	GATC	3 cut(s)	222, 580, 820
EcoRII	CCWGG	1 cut(s)	912
FaeI	CATG	2 cut(s)	511, 929
FalI	AAGNNNNNCTT	6 cut(s)	659, 691, 737, 769, 845, 877
FatI	CATG	2 cut(s)	507, 925
FauNDI	CATATG	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	48, 461, 798
FokI	GGATG	4 cut(s)	104, 334, 924, 930
Fsp4HI	GCNGC	3 cut(s)	48, 461, 798
GluI	GCNGC	3 cut(s)	48, 461, 798
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	875
HgaI	GACGC	2 cut(s)	487, 800
Hin1II	CATG	2 cut(s)	511, 929
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	114, 544
HphI	GGTGA	3 cut(s)	84, 328, 493
Hpy166II	GTNNAC	2 cut(s)	132, 697
Hpy188I	TCNGA	5 cut(s)	122, 174, 419, 600, 849
Hpy188III	TCNNGA	3 cut(s)	147, 538, 946
Hpy8I	GTNNAC	2 cut(s)	132, 697
Hpy99I	CGWCG	2 cut(s)	503, 816
HpyAV	CCTTC	5 cut(s)	396, 544, 772, 865, 976
HpyCH4III	ACNGT	3 cut(s)	241, 771, 791
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	9 cut(s)	47, 74, 530, 560, 726, 741, 757, 921, 954
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 186, 331, 754, 918
HpyF3I	CTNAG	6 cut(s)	145, 666, 711, 801, 899, 933
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	2 cut(s)	511, 929
Kzo9I	GATC	3 cut(s)	222, 580, 820
LmnI	GCTCC	2 cut(s)	495, 909
Lsp1109I	GCAGC	2 cut(s)	59, 784
LweI	GCATC	3 cut(s)	312, 908, 946
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	2 cut(s)	763, 815
MalI	GATC	3 cut(s)	224, 582, 822
MboI	GATC	3 cut(s)	222, 580, 820
MboII	GAAGA	4 cut(s)	12, 590, 727, 901
MfeI	CAATTG	1 cut(s)	632
MflI	RGATCY	1 cut(s)	580
MluCI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	200, 312, 836, 942
MseI	TTAA	4 cut(s)	108, 269, 312, 380
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	50, 463
MspR9I	CCNGG	1 cut(s)	914
MunI	CAATTG	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	914
MwoI	GCNNNNNNNGC	5 cut(s)	56, 186, 331, 754, 918
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	3 cut(s)	222, 580, 820
NlaIII	CATG	2 cut(s)	511, 929
NlaIV	GGNNCC	1 cut(s)	905
NspI	RCATGY	1 cut(s)	929
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	49, 462, 799
Ple19I	CGATCG	1 cut(s)	823
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	912
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	912
PspN4I	GGNNCC	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	580
PvuI	CGATCG	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	644, 773
RsaNI	GTAC	2 cut(s)	643, 772
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	108, 269, 312, 380
SatI	GCNGC	3 cut(s)	48, 461, 798
Sau3AI	GATC	3 cut(s)	222, 580, 820
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	914
SfaNI	GCATC	3 cut(s)	312, 908, 946
SfcI	CTRYAG	2 cut(s)	237, 652
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
SsiI	CCGC	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	912
TaaI	ACNGT	3 cut(s)	241, 771, 791
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	1 cut(s)	501
TasI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
TatI	WGTACW	2 cut(s)	642, 771
TauI	GCSGC	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	4 cut(s)	108, 269, 312, 380
Tru9I	TTAA	4 cut(s)	108, 269, 312, 380
TseI	GCWGC	2 cut(s)	47, 797
TspDTI	ATGAA	3 cut(s)	237, 277, 496
TspGWI	ACGGA	2 cut(s)	149, 579
XceI	RCATGY	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.