Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

28060675 .. 28061757

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26950.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTGAACGTTCCCAAGACGAAGAAGACCTACTGCAAGAGCAAGGAGTGCAAGAAGCACACCCTGCACAAAGTCACACAATACAAGAAGGGCAAGGATAGTCTTGCTGCTCAGGGAAAGCGTCGTTACGATCGCAAGCAGTCTGGTTATGGTGGACAGACAAAACCAGTCTTCCACAAGAAGGCAAAAACTACTAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCAAGCATGTATCCCAGCACCCAATCAAGGTTACTGTTATGGTGCAAATTGCTCCATTTGGTGTCTACCTTAGATTATCGATAATATCTAACGCGCACTGGTTTTTTCTGCAGAGGTGCAAGCACTTTGAAATCGGTGGAGACAAGAAGGGGAAGGGAACATCTCTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L44

Protein Analysis

134

Amino Acids

15.23

Weight (kDa)

10.31

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	323
AclI	AACGTT	1 cut(s)	9
AfiI	CCNNNNNNNGG	3 cut(s)	181, 223, 256
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BbsI	GAAGAC	2 cut(s)	32, 163
BbvCI	CCTCAGC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	224
BpiI	GAAGAC	2 cut(s)	32, 163
Bpu10I	CCTNAGC	2 cut(s)	111, 209
Bsa29I	ATCGAT	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 223, 256
Bse1I	ACTGG	2 cut(s)	167, 332
BseBI	CCWGG	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	223
BseLI	CCNNNNNNNGG	3 cut(s)	181, 223, 256
BseMII	CTCAG	2 cut(s)	125, 200
BseNI	ACTGG	2 cut(s)	167, 332
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	133
BshVI	ATCGAT	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	133
BslI	CCNNNNNNNGG	3 cut(s)	181, 223, 256
BsmAI	GTCTC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	124, 201
BspDI	ATCGAT	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	167, 332
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	265
BstAPI	GCANNNNNTGC	2 cut(s)	48, 64
BstC8I	GCNNGC	3 cut(s)	137, 233, 350
BstDEI	CTNAG	4 cut(s)	111, 195, 209, 299
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	130
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 64, 228
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	338
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	32, 163
Bsu15I	ATCGAT	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	250
BsuTUI	ATCGAT	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	3 cut(s)	137, 233, 350
CfoI	GCGC	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	308
CseI	GACGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	1 cut(s)	214
CviKI_1	RGCY	1 cut(s)	214
DdeI	CTNAG	4 cut(s)	111, 195, 209, 299
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	239
FaiI	YATR	3 cut(s)	150, 237, 269
FatI	CATG	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	108
GsaI	CCCAGC	1 cut(s)	247
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	7, 155, 295
Hpy8I	GTNNAC	3 cut(s)	7, 155, 295
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	4 cut(s)	82, 175, 370, 376
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	7 cut(s)	36, 51, 67, 231, 274, 340, 348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 64, 228
HpyF3I	CTNAG	4 cut(s)	111, 195, 209, 299
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	219, 286
LpnPI	CCDG	8 cut(s)	77, 98, 129, 180, 209, 236, 257, 313
Lsp1109I	GCAGC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	73, 125, 259
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	4 cut(s)	34, 37, 163, 211
MluCI	AATT	1 cut(s)	276
MnlI	CCTC	2 cut(s)	204, 336
MseI	TTAA	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	48, 64, 228
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	109
Ple19I	CGATCG	1 cut(s)	133
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	342
PvuI	CGATCG	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	400
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	5 cut(s)	12, 32, 261, 300, 347
SfcI	CTRYAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	308
TasI	AATT	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	400
Tru9I	TTAA	1 cut(s)	400
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	73
TspRI	CASTG	1 cut(s)	332
XceI	RCATGY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.