Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Reverse (-)

8241732 .. 8243923

Gene Structure 2192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTGAACATTCCGAAAACTAAGAACACTTACTGCAAGAACAAGGAGTGCAAGAAGCATACCTTGCACAAGGTGACGCAGTATAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAGCATTTCTCGCAACGCCCGATTAAGAGGTGCAAGCACTTTGAGATCGGTGGAGACAAGAAGGGAAAGGGAACATCTCTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L44

Protein Analysis

105

Amino Acids

12.13

Weight (kDa)

10.33

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L44	PF00935	19 - 94	1e-33	Ribosomal protein L44

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	107, 228
AsuHPI	GGTGA	2 cut(s)	16, 85
BbsI	GAAGAC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	94, 215
BcoDI	GTCTC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	108, 229
BlsI	GCNGC	2 cut(s)	109, 230
BpiI	GAAGAC	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	94, 215
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	130, 276
BspCNI	CTCAG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	130, 276
BssT1I	CCWWGG	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	233, 266
BstDEI	CTNAG	4 cut(s)	21, 186, 195, 209
BstKTI	GATC	2 cut(s)	133, 279
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	130, 276
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 228, 241
BstV1I	GCAGC	2 cut(s)	94, 215
BstV2I	GAAGAC	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	233, 266
CseI	GACGC	2 cut(s)	85, 110
CviJI	RGCY	5 cut(s)	102, 166, 185, 214, 228
CviKI_1	RGCY	5 cut(s)	102, 166, 185, 214, 228
DdeI	CTNAG	4 cut(s)	21, 186, 195, 209
DpnI	GATC	2 cut(s)	132, 278
DpnII	GATC	2 cut(s)	130, 276
DraIII	CACNNNGTG	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaiI	YATR	4 cut(s)	60, 84, 129, 150
FalI	AAGNNNNNCTT	6 cut(s)	47, 79, 87, 119, 155, 187
Fnu4HI	GCNGC	2 cut(s)	108, 229
Fsp4HI	GCNGC	2 cut(s)	108, 229
GluI	GCNGC	2 cut(s)	108, 229
HgaI	GACGC	2 cut(s)	85, 110
HphI	GGTGA	2 cut(s)	16, 85
Hpy166II	GTNNAC	2 cut(s)	7, 137
Hpy188I	TCNGA	2 cut(s)	15, 159
Hpy8I	GTNNAC	2 cut(s)	7, 137
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	175, 286
HpyCH4V	TGCA	5 cut(s)	36, 51, 67, 231, 264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 228, 241
HpyF3I	CTNAG	4 cut(s)	21, 186, 195, 209
Kzo9I	GATC	2 cut(s)	130, 276
LpnPI	CCDG	1 cut(s)	129
Lsp1109I	GCAGC	2 cut(s)	94, 215
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	132, 278
MboI	GATC	2 cut(s)	130, 276
MboII	GAAGA	2 cut(s)	163, 211
MnlI	CCTC	3 cut(s)	146, 204, 252
MseI	TTAA	2 cut(s)	255, 316
MwoI	GCNNNNNNNGC	3 cut(s)	64, 228, 241
NdeII	GATC	2 cut(s)	130, 276
NmuCI	GTSAC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	130, 248
PkrI	GCNGC	2 cut(s)	109, 230
SaqAI	TTAA	2 cut(s)	255, 316
SatI	GCNGC	2 cut(s)	108, 229
Sau3AI	GATC	2 cut(s)	130, 276
SetI	ASST	6 cut(s)	65, 75, 94, 157, 230, 263
StyI	CCWWGG	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	255, 316
Tru9I	TTAA	2 cut(s)	255, 316
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	107, 228
Tsp45I	GTSAC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.