Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001647

Physical Location & Seq

Genomic Coordinates Forward (+)

85572249 .. 85576312

Gene Structure 4064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTTGCCAATGGAGTTGTCTTCTGTGTATTTAGGTTTCAGTGTTGCAGCTGGAATTGCTGGTAATGTCTTTGCATTTGTGTTGTTTGTCTCACCAATACCAACATTTAAGAGAATCATCCGAAACAAGTCAACGGAACAATTCTCAGGATTGCCTTACATATATGCCTTTCTGAATTGCTTGATATGCCTCTGGTATGGCTCGCCTGCTGTGAAGACTGGGATCATATTGGTGGCTACAGTCAATTCATTTGGGGCAGTTTTCCAGTTAATCTACATAAGCATTTTCATCGCTTATGCTCAAAAGGAAATTAAGGTGAGGATGCTGGGATTGCTACTGGTAGTTCTTGCTATTTTTGGATTGATAGTCTATGTGAGCTTAACAGTTTTAGACTATGATGGAAGGCAGACATTTGTCGGATATTTGAGTGTTTTTTCACTTATCTCAATGTTTGCTTCGCCACTGTTTATCATAAAATTGGTGATAAAAACAAGGAGCGTCGAGTTCATGCCATTCTATCTTTCTCTTGCAACCTTCTTGATGAGTATCTCTTTCTCTGCATACGGAGTGTTGAAGGAAGATCCATTCCTATATGTTCCGAATGGTATTGGAACAATTTTGGCTATTGTCCAATTGGCTTTGTACTTCTACTACAGCAGCCCATCTAAGAAAGACTTGAGAGAACCCTTGATAGTGAACGTTCCCAAGACTAAGAAGACCTACTGCAAGAACAAGGCGTGCAAGAAGCACACCTTGCACAAGGTTACACAGTACAAGAAGGGCAAGGATAGTCTTGCTGCTCAGGGAAAGCGTCGTTACGATCGCAAGCAGTCTGGTTATGGAGGTCAGACCAAGCCAGTCTTTCACAAGAAGGCCAAGACTACCAAGAAGATTGTTCTAAGGCTCCAATGCCAGGGATGCAAGCATGTTTCTCAGCATCCAATCAAGAGGTGCAAGCACTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACATCGCTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

335

Amino Acids

37.57

Weight (kDa)

9.92

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	18 - 103	2.4e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	138 - 220	2.7e-22	Sugar efflux transporter for intercellular exchange
Ribosomal_L44	PF00935	249 - 324	2.1e-32	Ribosomal protein L44

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23390 AT4G14320 AT4G14320
fragaria_vesca	FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06470 FvH4_3g06480 FvH4_5g17571
malus_domestica	MD05G1293000.v1.1 MD05G1293100.v1.1 MD05G1293200.v1.1 MD06G1231700.v1.1 MD10G1269000.v1.1 MD10G1269100.v1.1 MD10G1269300.v1.1 MD14G1238400.v1.1
prunus_persica	Prupe.4G072300_v2.0.a1 Prupe.4G072400_v2.0.a1 Prupe.5G235600_v2.0.a1 Prupe.5G235600_v2.0.a1
pyrus_communis	pycom05g26950 pycom05g26960 pycom05g26970 pycom06g20570 pycom10g22540 pycom10g22550
rosa_chinensis	RchiOBHm_Chr5g0012801 RchiOBHm_Chr5g0012811 RchiOBHm_Chr7g0178071
rosa_laevigata	RLG00000005474 RLG00000031957
rosa_multiflora	Rmu_sc0000425.1_g000006 Rmu_sc0002365.1_g000037
rosa_roxburghii	Rroxscaffold_1G00063790
rosa_rugosa	Rorug02G0285800 Rorug05G0004400 Rorug05G0004500
rosa_samantha	Rh5AG098100 Rh5AG098200 Rh5BG095100 Rh5CG107000 Rh5DG093800 Rh7AG012500 Rh7BG012400 Rh7CG012400 Rh7DG012700
rosa_wichuraiana	Rw5G008580 Rw5G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	699
AclWI	GGATC	2 cut(s)	230, 575
AfaI	GTAC	2 cut(s)	644, 773
AfiI	CCNNNNNNNGG	1 cut(s)	913
AgsI	TTSAA	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	912
AluBI	AGCT	2 cut(s)	50, 378
AluI	AGCT	2 cut(s)	50, 378
Alw26I	GTCTC	2 cut(s)	94, 969
AlwI	GGATC	2 cut(s)	230, 575
AoxI	GGCC	1 cut(s)	873
ApeKI	GCWGC	3 cut(s)	47, 657, 797
AsuHPI	GGTGA	3 cut(s)	84, 328, 493
BbsI	GAAGAC	3 cut(s)	12, 221, 722
BbvI	GCAGC	3 cut(s)	59, 669, 784
BccI	CCATC	2 cut(s)	392, 670
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	914
BcoDI	GTCTC	2 cut(s)	94, 969
BfmI	CTRYAG	2 cut(s)	237, 652
BisI	GCNGC	3 cut(s)	48, 658, 798
BlsI	GCNGC	3 cut(s)	49, 659, 799
Bme1390I	CCNGG	1 cut(s)	914
BmiI	GGNNCC	1 cut(s)	905
BmrFI	CCNGG	1 cut(s)	914
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	3 cut(s)	312, 908, 946
BmuI	ACTGGG	1 cut(s)	228
BoxI	GACNNNNGTC	1 cut(s)	413
BpiI	GAAGAC	3 cut(s)	12, 221, 722
Bpu10I	CCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	697
BsaBI	GATNNNNATC	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	913
Bsc4I	CCNNNNNNNGG	1 cut(s)	913
Bse1I	ACTGG	4 cut(s)	223, 265, 342, 857
Bse8I	GATNNNNATC	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	914
BseDI	CCNNGG	1 cut(s)	913
BseGI	GGATG	4 cut(s)	117, 327, 923, 937
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	1 cut(s)	913
BseMII	CTCAG	3 cut(s)	159, 815, 947
BseNI	ACTGG	4 cut(s)	223, 265, 342, 857
BseXI	GCAGC	3 cut(s)	59, 669, 784
BseYI	CCCAGC	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	1 cut(s)	875
BsiEI	CGRYCG	1 cut(s)	823
BslI	CCNNNNNNNGG	1 cut(s)	913
BsmAI	GTCTC	2 cut(s)	94, 969
BsnI	GGCC	1 cut(s)	875
Bsp143I	GATC	3 cut(s)	222, 580, 820
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	3 cut(s)	158, 814, 946
BspLI	GGNNCC	1 cut(s)	905
BspPI	GGATC	2 cut(s)	230, 575
BsrI	ACTGG	4 cut(s)	223, 265, 342, 857
BssECI	CCNNGG	1 cut(s)	913
BssMI	GATC	3 cut(s)	222, 580, 820
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	4 cut(s)	241, 385, 465, 771
BstAPI	GCANNNNNTGC	1 cut(s)	754
BstC8I	GCNNGC	6 cut(s)	203, 207, 739, 827, 923, 956
BstDEI	CTNAG	6 cut(s)	145, 666, 711, 801, 899, 933
BstF5I	GGATG	4 cut(s)	117, 327, 923, 937
BstKTI	GATC	3 cut(s)	225, 583, 823
BstMAI	GTCTC	2 cut(s)	94, 969
BstMBI	GATC	3 cut(s)	222, 580, 820
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 186, 331, 754, 918
BstNI	CCWGG	1 cut(s)	914
BstNSI	RCATGY	1 cut(s)	929
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	912
BstSFI	CTRYAG	2 cut(s)	237, 652
BstV1I	GCAGC	3 cut(s)	59, 669, 784
BstV2I	GAAGAC	3 cut(s)	12, 221, 722
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	875
BtgZI	GCGATG	2 cut(s)	274, 981
BtsCI	GGATG	4 cut(s)	117, 327, 923, 937
BtsIMutI	CAGTG	2 cut(s)	46, 461
Cac8I	GCNNGC	6 cut(s)	203, 207, 739, 827, 923, 956
CseI	GACGC	2 cut(s)	487, 800
Csp6I	GTAC	2 cut(s)	643, 772
CviAII	CATG	2 cut(s)	508, 926
CviQI	GTAC	2 cut(s)	643, 772
DdeI	CTNAG	6 cut(s)	145, 666, 711, 801, 899, 933
DpnI	GATC	3 cut(s)	224, 582, 822
DpnII	GATC	3 cut(s)	222, 580, 820
EcoRII	CCWGG	1 cut(s)	912
FaeI	CATG	2 cut(s)	511, 929
FalI	AAGNNNNNCTT	6 cut(s)	659, 691, 737, 769, 845, 877
FatI	CATG	2 cut(s)	507, 925
Fnu4HI	GCNGC	3 cut(s)	48, 658, 798
FokI	GGATG	4 cut(s)	104, 334, 924, 930
Fsp4HI	GCNGC	3 cut(s)	48, 658, 798
GluI	GCNGC	3 cut(s)	48, 658, 798
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	875
HgaI	GACGC	2 cut(s)	487, 800
Hin1II	CATG	2 cut(s)	511, 929
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	114
HphI	GGTGA	3 cut(s)	84, 328, 493
Hpy166II	GTNNAC	2 cut(s)	132, 697
Hpy188I	TCNGA	5 cut(s)	122, 174, 419, 600, 849
Hpy188III	TCNNGA	3 cut(s)	147, 538, 946
Hpy8I	GTNNAC	2 cut(s)	132, 697
Hpy99I	CGWCG	2 cut(s)	503, 816
HpyAV	CCTTC	6 cut(s)	396, 544, 568, 772, 865, 976
HpyCH4III	ACNGT	4 cut(s)	241, 385, 465, 771
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	9 cut(s)	47, 74, 530, 560, 726, 741, 757, 921, 954
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 186, 331, 754, 918
HpyF3I	CTNAG	6 cut(s)	145, 666, 711, 801, 899, 933
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	2 cut(s)	511, 929
Kzo9I	GATC	3 cut(s)	222, 580, 820
LmnI	GCTCC	2 cut(s)	495, 909
Lsp1109I	GCAGC	3 cut(s)	59, 669, 784
LweI	GCATC	3 cut(s)	312, 908, 946
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	2 cut(s)	763, 815
MalI	GATC	3 cut(s)	224, 582, 822
MboI	GATC	3 cut(s)	222, 580, 820
MboII	GAAGA	5 cut(s)	12, 226, 590, 727, 901
MfeI	CAATTG	1 cut(s)	632
MflI	RGATCY	1 cut(s)	580
MluCI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	200, 312, 836, 942
MseI	TTAA	4 cut(s)	108, 269, 312, 380
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	914
MunI	CAATTG	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	914
MwoI	GCNNNNNNNGC	5 cut(s)	56, 186, 331, 754, 918
NdeII	GATC	3 cut(s)	222, 580, 820
NlaIII	CATG	2 cut(s)	511, 929
NlaIV	GGNNCC	1 cut(s)	905
NspI	RCATGY	1 cut(s)	929
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	49, 659, 799
Ple19I	CGATCG	1 cut(s)	823
PshAI	GACNNNNGTC	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	912
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	912
PspN4I	GGNNCC	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	580
PvuI	CGATCG	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	644, 773
RsaNI	GTAC	2 cut(s)	643, 772
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	108, 269, 312, 380
SatI	GCNGC	3 cut(s)	48, 658, 798
Sau3AI	GATC	3 cut(s)	222, 580, 820
ScrFI	CCNGG	1 cut(s)	914
SfaNI	GCATC	3 cut(s)	312, 908, 946
SfcI	CTRYAG	2 cut(s)	237, 652
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
StyD4I	CCNGG	1 cut(s)	912
TaaI	ACNGT	4 cut(s)	241, 385, 465, 771
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	1 cut(s)	501
TasI	AATT	8 cut(s)	54, 140, 175, 244, 309, 476, 615, 632
TatI	WGTACW	2 cut(s)	642, 771
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	4 cut(s)	108, 269, 312, 380
Tru9I	TTAA	4 cut(s)	108, 269, 312, 380
TscAI	CASTG	2 cut(s)	46, 468
TseI	GCWGC	3 cut(s)	47, 657, 797
TspDTI	ATGAA	3 cut(s)	237, 277, 496
TspGWI	ACGGA	2 cut(s)	149, 579
TspRI	CASTG	2 cut(s)	46, 468
XceI	RCATGY	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.