Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002365.1

Orthogroup ID

OG0006233

Physical Location & Seq

Genomic Coordinates Reverse (-)

182777 .. 187633

Gene Structure 4857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002365.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

atggggattcaagggcttctgcccttgttgaaatctataatggagccaatccacattaaggacttgaagggctcttgtgtagccatcgatacctactcttggcttcacaaaggtgccctgtcctgcagcagagacctctgtaaaggcatacccacttccaggcacattgactactgcatgcatagagtgaatctgctgcggcattacggtgttaagcctatacttgtctttgatggcggtcttctaccgatgaagggtgaacaagagaacaaacgtgcaagggcgagaaaggaaaattttgctcgtgctattgagcatgattccaatggcaattcttctgctgcttatgagtgctaccagaaagctgttgacatttcaccttctattgccctagagttaatccaggagaatgtatgttatgttgtggctccatatgaggcagacgcacaaatgaccttcttggcagtcagcaaacaggtggaggcagtcatcactgaagactctgatctaataccatttggatgtcctagaattatctataaaatggacaaatttgggcaaggtgttgagtttcagtattcaaggctacctcggaacaaggacttgagctttgcagggttcacaaaacagatggttctggagatgtgtattcttagtgcaaagagaaaattcagggcaccacgatcatcacctgatgatccaagtccaatttctagttctagtctcagcccagatgagaatacctctgtggatgatgcttttggtaaaaccaacttctcaggttcttctcccagtctagatgaacatgtctctgtggatgatgccgtttgtacaacaaattactcagggcccattctgcttgaccctgaaaacattggaaatacgcctcctagtgattcagtagaagatggttttcccactgatttatcagaatctccaaatgatgatatggcgggcaagacaagaagtccagacagtacattgttacaacaacccatacattcaattcacaaaccctgtttaacactgcatagggagcgtgaatgtaagaatgcccaaggcacatttgagggtaaaacaaggacagagaacagaaaggtcattgtaagaagtccttattttaaggagaaatcaaacaatgaaaataagcaggaagataaacaagaaaaaatcttgttgaaggattctcttggcaacaatatgtatgataatgcagatcctgagagtgcccctttctggaatagccatttccctagaaaacttgtgaaaaggaaaaactccccaaatgacagcgttcaagaggacgatgggaaacccaaacaaatgtgtactaatgcatcactacctggtaacggtccctctgcttccagccatgaagcaacatttaaggacacaaaaactgaagaaggaagatttggatccaacatttcccatttgggtcgttactctgatatagcagagaagtcgatggaaaattttgtttcagtaatatcatcatttagatttggctcatctggttctcgtgcaagtggcctccgtgctcctctgaaagatgttcgaaatacttgtaccaataggacaactgttggtgctgactttagccaatttgaatatgtaccaaataatcaaaagacaaaaacaacatctcgaaaacgaagaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

554

Amino Acids

61.59

Weight (kDa)

7.53

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29630 AT1G29630 AT1G29630
fragaria_vesca	FvH4_3g06460 FvH4_3g06460 FvH4_3g06460 FvH4_3g06460 FvH4_3g06460
malus_domestica	MD10G1269500.v1.1
prunus_persica	Prupe.4G072200_v2.0.a1
pyrus_communis	pycom10g22570
rosa_chinensis	RchiOBHm_Chr5g0012821 RchiOBHm_Chr5g0012831
rosa_laevigata	RLG00000031958
rosa_multiflora	Rmu_sc0002365.1_g000036 Rmu_sc0022594.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063780
rosa_rugosa	Rorug05G0004500 Rorug05G0004500
rosa_samantha	Rh5AG098300 Rh5AG098400 Rh5BG095200 Rh5CG107200 Rh5CG107300 Rh5DG093900 Rh5DG094000
rosa_wichuraiana	Rw5G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	113, 676
AciI	CCGC	3 cut(s)	199, 237, 953
AclWI	GGATC	4 cut(s)	692, 1211, 1413, 1426
AcsI	RAATTY	5 cut(s)	295, 551, 668, 1474, 1659
AcuI	CTGAAG	2 cut(s)	516, 1422
AfaI	GTAC	5 cut(s)	832, 979, 1330, 1570, 1617
AfiI	CCNNNNNNNGG	6 cut(s)	58, 99, 159, 254, 1236, 1352
AflIII	ACRYGT	1 cut(s)	805
AgsI	TTSAA	8 cut(s)	11, 31, 67, 582, 1005, 1180, 1298, 1610
AhdI	GACNNNNNGTC	1 cut(s)	966
AjnI	CCWGG	3 cut(s)	158, 402, 1345
AjuI	GAANNNNNNNTTGG	6 cut(s)	694, 700, 726, 732, 1398, 1430
AleI	CACNNNNGTG	1 cut(s)	111
AluBI	AGCT	2 cut(s)	365, 609
AluI	AGCT	2 cut(s)	365, 609
Alw21I	GWGCWC	1 cut(s)	1543
Alw26I	GTCTC	3 cut(s)	126, 728, 814
AlwI	GGATC	4 cut(s)	692, 1211, 1413, 1426
AlwNI	CAGNNNCTG	1 cut(s)	1220
AoxI	GGCC	2 cut(s)	848, 1531
ApaI	GGGCCC	1 cut(s)	852
ApeKI	GCWGC	3 cut(s)	126, 196, 341
ApoI	RAATTY	5 cut(s)	295, 551, 668, 1474, 1659
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AspS9I	GGNCC	3 cut(s)	848, 849, 1355
AsuHPI	GGTGA	3 cut(s)	269, 369, 681
AsuII	TTCGAA	1 cut(s)	1558
AvaII	GGWCC	1 cut(s)	1355
BaeGI	GKGCMC	4 cut(s)	118, 679, 852, 1231
BamHI	GGATCC	1 cut(s)	1418
BanI	GGYRCC	2 cut(s)	113, 676
BanII	GRGCYC	2 cut(s)	74, 852
BauI	CACGAG	2 cut(s)	303, 1521
BbsI	GAAGAC	2 cut(s)	233, 504
Bbv12I	GWGCWC	1 cut(s)	1543
BbvI	GCAGC	3 cut(s)	138, 183, 328
BccI	CCATC	6 cut(s)	92, 227, 625, 902, 1301, 1462
BceAI	ACGGC	1 cut(s)	809
BcgI	CGANNNNNNTGC	2 cut(s)	1446, 1480
BciT130I	CCWGG	3 cut(s)	160, 404, 1347
BcoDI	GTCTC	3 cut(s)	126, 728, 814
BfaI	CTAG	7 cut(s)	392, 528, 714, 720, 797, 891, 1254
BfmI	CTRYAG	1 cut(s)	124
BisI	GCNGC	4 cut(s)	127, 197, 200, 342
BlsI	GCNGC	4 cut(s)	128, 198, 201, 343
Bme1390I	CCNGG	3 cut(s)	160, 404, 1347
Bme18I	GGWCC	1 cut(s)	1355
BmeRI	GACNNNNNGTC	1 cut(s)	966
BmgT120I	GGNCC	3 cut(s)	848, 849, 1355
BmiI	GGNNCC	7 cut(s)	45, 115, 429, 678, 850, 1357, 1420
BmrFI	CCNGG	3 cut(s)	160, 404, 1347
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	3 cut(s)	745, 811, 1346
BmuI	ACTGGG	1 cut(s)	786
BpiI	GAAGAC	2 cut(s)	233, 504
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	1 cut(s)	659
Bpu14I	TTCGAA	1 cut(s)	1558
BpuEI	CTTGAG	1 cut(s)	625
Bsa29I	ATCGAT	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	1417
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	590, 1057
Bsc4I	CCNNNNNNNGG	6 cut(s)	58, 99, 159, 254, 1236, 1352
Bse1I	ACTGG	1 cut(s)	792
Bse8I	GATNNNNATC	1 cut(s)	1417
BseBI	CCWGG	3 cut(s)	160, 404, 1347
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	590, 1057
BseGI	GGATG	3 cut(s)	527, 757, 823
BseJI	GATNNNNATC	1 cut(s)	1417
BseLI	CCNNNNNNNGG	6 cut(s)	58, 99, 159, 254, 1236, 1352
BseMII	CTCAG	4 cut(s)	739, 792, 858, 1212
BseNI	ACTGG	1 cut(s)	792
BseRI	GAGGAG	1 cut(s)	1533
BseSI	GKGCMC	4 cut(s)	118, 679, 852, 1231
BseXI	GCAGC	3 cut(s)	138, 183, 328
BshFI	GGCC	2 cut(s)	850, 1533
BshNI	GGYRCC	2 cut(s)	113, 676
BshVI	ATCGAT	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	1543
BslFI	GGGAC	1 cut(s)	1341
BslI	CCNNNNNNNGG	6 cut(s)	58, 99, 159, 254, 1236, 1352
BsmAI	GTCTC	3 cut(s)	126, 728, 814
BsmFI	GGGAC	1 cut(s)	1341
BsmI	GAATGC	1 cut(s)	1057
BsnI	GGCC	2 cut(s)	850, 1533
Bso31I	GGTCTC	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	1558
Bsp120I	GGGCCC	1 cut(s)	848
Bsp1286I	GDGCHC	6 cut(s)	74, 118, 679, 852, 1231, 1543
Bsp1407I	TGTACA	1 cut(s)	830
Bsp143I	GATC	5 cut(s)	505, 683, 697, 1216, 1418
BspACI	CCGC	3 cut(s)	199, 237, 953
BspANI	GGCC	2 cut(s)	850, 1533
BspCNI	CTCAG	4 cut(s)	738, 791, 857, 1213
BspDI	ATCGAT	1 cut(s)	87
BspLI	GGNNCC	7 cut(s)	45, 115, 429, 678, 850, 1357, 1420
BspMAI	CTGCAG	1 cut(s)	128
BspPI	GGATC	4 cut(s)	692, 1211, 1413, 1426
BspT104I	TTCGAA	1 cut(s)	1558
BspT107I	GGYRCC	2 cut(s)	113, 676
BspTNI	GGTCTC	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	830
BsrI	ACTGG	1 cut(s)	792
BssECI	CCNNGG	2 cut(s)	590, 1057
BssMI	GATC	5 cut(s)	505, 683, 697, 1216, 1418
BssSI	CACGAG	2 cut(s)	303, 1521
BssT1I	CCWWGG	1 cut(s)	1057
Bst2BI	CACGAG	2 cut(s)	303, 1521
Bst2UI	CCWGG	3 cut(s)	160, 404, 1347
Bst4CI	ACNGT	4 cut(s)	209, 977, 1355, 1585
BstAUI	TGTACA	1 cut(s)	830
BstBI	TTCGAA	1 cut(s)	1558
BstC8I	GCNNGC	2 cut(s)	179, 955
BstDEI	CTNAG	5 cut(s)	653, 725, 778, 844, 1221
BstF5I	GGATG	3 cut(s)	527, 757, 823
BstKTI	GATC	5 cut(s)	508, 686, 700, 1219, 1421
BstMAI	GTCTC	3 cut(s)	126, 728, 814
BstMBI	GATC	5 cut(s)	505, 683, 697, 1216, 1418
BstMWI	GCNNNNNNNGC	2 cut(s)	856, 1036
BstNI	CCWGG	3 cut(s)	160, 404, 1347
BstNSI	RCATGY	2 cut(s)	181, 809
BstSCI	CCNGG	3 cut(s)	158, 402, 1345
BstSFI	CTRYAG	1 cut(s)	124
BstSLI	GKGCMC	4 cut(s)	118, 679, 852, 1231
BstV1I	GCAGC	3 cut(s)	138, 183, 328
BstV2I	GAAGAC	2 cut(s)	233, 504
BstX2I	RGATCY	2 cut(s)	1216, 1418
BstYI	RGATCY	2 cut(s)	1216, 1418
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	850, 1533
BsuTUI	ATCGAT	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	527, 757, 823
BtsI	GCAGTG	1 cut(s)	1025
BtsIMutI	CAGTG	3 cut(s)	492, 918, 1025
Cac8I	GCNNGC	2 cut(s)	179, 955
CaiI	CAGNNNCTG	1 cut(s)	1220
Cfr13I	GGNCC	3 cut(s)	848, 849, 1355
ClaI	ATCGAT	1 cut(s)	87
CseI	GACGC	1 cut(s)	452
CsiI	ACCWGGT	1 cut(s)	1345
Csp6I	GTAC	5 cut(s)	831, 978, 1329, 1569, 1616
CviAII	CATG	4 cut(s)	178, 317, 806, 1373
CviQI	GTAC	5 cut(s)	831, 978, 1329, 1569, 1616
DdeI	CTNAG	5 cut(s)	653, 725, 778, 844, 1221
DpnI	GATC	5 cut(s)	507, 685, 699, 1218, 1420
DpnII	GATC	5 cut(s)	505, 683, 697, 1216, 1418
DriI	GACNNNNNGTC	1 cut(s)	966
Eam1105I	GACNNNNNGTC	1 cut(s)	966
Eco130I	CCWWGG	1 cut(s)	1057
Eco24I	GRGCYC	2 cut(s)	74, 852
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	1355
Eco57I	CTGAAG	2 cut(s)	516, 1422
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRII	CCWGG	3 cut(s)	158, 402, 1345
EcoT14I	CCWWGG	1 cut(s)	1057
EcoT22I	ATGCAT	2 cut(s)	183, 1339
EcoT38I	GRGCYC	2 cut(s)	74, 852
ErhI	CCWWGG	1 cut(s)	1057
FaeI	CATG	4 cut(s)	181, 320, 809, 1376
FalI	AAGNNNNNCTT	2 cut(s)	1099, 1131
FaqI	GGGAC	1 cut(s)	1341
FatI	CATG	4 cut(s)	177, 316, 805, 1372
FauI	CCCGC	1 cut(s)	946
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	4 cut(s)	127, 197, 200, 342
FokI	GGATG	3 cut(s)	534, 764, 830
FriOI	GRGCYC	2 cut(s)	74, 852
Fsp4HI	GCNGC	4 cut(s)	127, 197, 200, 342
FspBI	CTAG	7 cut(s)	392, 528, 714, 720, 797, 891, 1254
GluI	GCNGC	4 cut(s)	127, 197, 200, 342
GsuI	CTGGAG	1 cut(s)	659
HaeIII	GGCC	2 cut(s)	850, 1533
HgaI	GACGC	1 cut(s)	452
Hin1II	CATG	4 cut(s)	181, 320, 809, 1376
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	7 cut(s)	7, 190, 320, 500, 896, 932, 1184
HphI	GGTGA	3 cut(s)	269, 369, 681
Hpy166II	GTNNAC	4 cut(s)	260, 370, 621, 1329
Hpy188I	TCNGA	5 cut(s)	505, 594, 931, 1450, 1548
Hpy188III	TCNNGA	7 cut(s)	638, 797, 971, 1220, 1237, 1298, 1647
Hpy8I	GTNNAC	4 cut(s)	260, 370, 621, 1329
HpyAV	CCTTC	6 cut(s)	61, 247, 390, 466, 1174, 1400
HpyCH4III	ACNGT	4 cut(s)	209, 977, 1355, 1585
HpyCH4IV	ACGT	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	856, 1036
HpyF3I	CTNAG	5 cut(s)	653, 725, 778, 844, 1221
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	4 cut(s)	181, 320, 809, 1376
Kzo9I	GATC	5 cut(s)	505, 683, 697, 1216, 1418
LmnI	GCTCC	4 cut(s)	43, 433, 1036, 1546
Lsp1109I	GCAGC	3 cut(s)	138, 183, 328
LweI	GCATC	3 cut(s)	745, 811, 1346
MabI	ACCWGGT	1 cut(s)	1345
MaeI	CTAG	7 cut(s)	392, 528, 714, 720, 797, 891, 1254
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	3 cut(s)	984, 1349, 1442
MalI	GATC	5 cut(s)	507, 685, 699, 1218, 1420
MboI	GATC	5 cut(s)	505, 683, 697, 1216, 1418
MboII	GAAGA	8 cut(s)	233, 327, 509, 777, 917, 1166, 1415, 1422
MflI	RGATCY	2 cut(s)	1216, 1418
MhlI	GDGCHC	6 cut(s)	74, 118, 679, 852, 1231, 1543
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	1446
Mph1103I	ATGCAT	2 cut(s)	183, 1339
MseI	TTAA	6 cut(s)	57, 213, 398, 1022, 1122, 1386
MslI	CAYNNNNRTG	3 cut(s)	111, 207, 520
MspR9I	CCNGG	3 cut(s)	160, 404, 1347
Mva1269I	GAATGC	1 cut(s)	1057
MvaI	CCWGG	3 cut(s)	160, 404, 1347
MwoI	GCNNNNNNNGC	2 cut(s)	856, 1036
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	5 cut(s)	505, 683, 697, 1216, 1418
NlaIII	CATG	4 cut(s)	181, 320, 809, 1376
NlaIV	GGNNCC	7 cut(s)	45, 115, 429, 678, 850, 1357, 1420
NsiI	ATGCAT	2 cut(s)	183, 1339
NspI	RCATGY	2 cut(s)	181, 809
NspV	TTCGAA	1 cut(s)	1558
OliI	CACNNNNGTG	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	181
PciI	ACATGT	1 cut(s)	805
PctI	GAATGC	1 cut(s)	1057
PfeI	GAWTC	6 cut(s)	7, 190, 320, 896, 932, 1184
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	4 cut(s)	128, 198, 201, 343
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PscI	ACATGT	1 cut(s)	805
Psp6I	CCWGG	3 cut(s)	158, 402, 1345
PspGI	CCWGG	3 cut(s)	158, 402, 1345
PspN4I	GGNNCC	7 cut(s)	45, 115, 429, 678, 850, 1357, 1420
PspOMI	GGGCCC	1 cut(s)	848
PspPI	GGNCC	3 cut(s)	848, 849, 1355
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	1220
PsuI	RGATCY	2 cut(s)	1216, 1418
RsaI	GTAC	5 cut(s)	832, 979, 1330, 1570, 1617
RsaNI	GTAC	5 cut(s)	831, 978, 1329, 1569, 1616
RseI	CAYNNNNRTG	3 cut(s)	111, 207, 520
SaqAI	TTAA	6 cut(s)	57, 213, 398, 1022, 1122, 1386
SatI	GCNGC	4 cut(s)	127, 197, 200, 342
Sau3AI	GATC	5 cut(s)	505, 683, 697, 1216, 1418
Sau96I	GGNCC	3 cut(s)	848, 849, 1355
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	160, 404, 1347
SduI	GDGCHC	6 cut(s)	74, 118, 679, 852, 1231, 1543
SexAI	ACCWGGT	1 cut(s)	1345
SfaNI	GCATC	3 cut(s)	745, 811, 1346
SfcI	CTRYAG	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	1558
SinI	GGWCC	1 cut(s)	1355
SmiMI	CAYNNNNRTG	3 cut(s)	111, 207, 520
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
SphI	GCATGC	1 cut(s)	181
SsiI	CCGC	3 cut(s)	199, 237, 953
SspMI	CTAG	7 cut(s)	392, 528, 714, 720, 797, 891, 1254
StyD4I	CCNGG	3 cut(s)	158, 402, 1345
StyI	CCWWGG	1 cut(s)	1057
TaaI	ACNGT	4 cut(s)	209, 977, 1355, 1585
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	4 cut(s)	87, 1466, 1558, 1648
TatI	WGTACW	3 cut(s)	830, 977, 1328
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	6 cut(s)	7, 190, 320, 896, 932, 1184
Tru1I	TTAA	6 cut(s)	57, 213, 398, 1022, 1122, 1386
Tru9I	TTAA	6 cut(s)	57, 213, 398, 1022, 1122, 1386
TscAI	CASTG	3 cut(s)	499, 925, 1032
TseI	GCWGC	3 cut(s)	126, 196, 341
TspDTI	ATGAA	4 cut(s)	266, 816, 1155, 1389
TspGWI	ACGGA	1 cut(s)	1526
TspRI	CASTG	3 cut(s)	499, 925, 1032
VpaK11BI	GGWCC	1 cut(s)	1355
XapI	RAATTY	5 cut(s)	295, 551, 668, 1474, 1659
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	2 cut(s)	181, 809
XspI	CTAG	7 cut(s)	392, 528, 714, 720, 797, 891, 1254
Zsp2I	ATGCAT	2 cut(s)	183, 1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.