RchiOBHm_Chr5g0015231

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018618
Physical Location & Seq
Forward (+)
10541547 .. 10544786
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29565

Sequence Viewer

Length: 1083 bp
ATGGTTTGTTACTTTGTTAACCATAATATTAAATGCTGCCCAAATGCAACTGCAACACCCACATCTCTAAAACCACGAGCTCTCCATTTTCCCCCAAATTCACGAAGCCCAAATCTTTCCTCTAATCCCAAACCTTTCAACCAAGCTCTCCTCTTTATGTCCTCACCTTCATCTCCAAAACGACCATGCGGAGCCCCGATCCGAAACTGGACGGAGCTCCCGGAGGACGTCACGGCGGCGATCCTCTCCCGTCTCGGAGCCATCGACATCCTCGAGACGGCTCAGAAGGTCTGCAAGACGTGGTACAGCGTCTGCAAGGACCCTCTCATGTGGCGCATCGTCGACTTCCGCGACGATGATCTCCACAAAGTTCATGACTTGGGGAAGATGTGCCGCTACGCCGTTGATCGGAGCGATGGGAAATTGGCCAGTATCAATCTCGATTCCTTCGCCACCGATGAGCTCCTCAAGTACATCACTGATAGTTCAAGTGAAATCAGATGTCTACGACTTGTGCGTTGCAACATAACAAGTGAGGGATTGAGTGCAGTGTCTTCAAGACTTCCACTGTTGGAGGAACTTGAAATTTCACATTGCCCGCTCTCACATGAAACTCTAGAAGTGGTTGGGGCCTCTTGTCCTCTTTTGAAATCACTGAAACTCAACAGTCGATGGTACAGTTTCGCCCATGAGGAGTGTAACAAGCATGCACTTGCCATAGCAGGAACAATGCATAATTTATGCCACCTCCAGATTTTTGCGAATAAGCTGACTAATGATGGCTTGCAGACTATACTTGATGGTTGTCCTCCACTTGAGTCGCTTGATCTGCGCCAGTGTTACAATCTTAATCTGGAGGAAAATTTTGAGAAAAGATTGGTGGCACGAATTAAACTTTTACGGCTTCCGGATGATTCAACTGATGACTATGAGTTTGATGCTACGGTTCTCGAGTACGGATCAGATAATCCAGAGCCTGAAGTCGAATTTTTTGACGAAATGTTCATGGTAGATGATGCAGATGGTGAAGTCTTCCCCTGGAATGGTTTCGTTGAGTTTGAGGATTTCTATTACTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

360

Amino Acids

40.84

Weight (kDa)

4.97

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 70 - 116 1e-09 F-box-like
F-box PF00646 70 - 112 3.2e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018618)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0015231
rosa_laevigata RLG00000032178 RLG00000032179
rosa_multiflora Rmu_sc0002209.1_g000023
rosa_roxburghii Rroxscaffold_1G00061340
rosa_rugosa Rorug05G0024800
rosa_samantha Rh5BG117400 Rh5CG128500 Rh5DG116500
rosa_wichuraiana Rw5G010310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 601
AccI GTMKAC 2 cut(s) 342, 505
AccII CGCG 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 907
AciI CCGC 5 cut(s) 189, 236, 349, 394, 599
AclWI GGATC 3 cut(s) 193, 235, 967
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 4 cut(s) 97, 585, 862, 986
AcuI CTGAAG 1 cut(s) 999
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 4 cut(s) 305, 473, 677, 956
AfiI CCNNNNNNNGG 3 cut(s) 277, 408, 1043
AgsI TTSAA 6 cut(s) 139, 489, 558, 584, 649, 918
AjiI CACGTC 1 cut(s) 300
AjnI CCWGG 1 cut(s) 1037
AluBI AGCT 5 cut(s) 80, 146, 217, 463, 769
AluI AGCT 5 cut(s) 80, 146, 217, 463, 769
Alw21I GWGCWC 3 cut(s) 82, 219, 465
Alw26I GTCTC 2 cut(s) 257, 269
AlwI GGATC 3 cut(s) 193, 235, 967
AlwNI CAGNNNCTG 2 cut(s) 312, 977
Ama87I CYCGRG 2 cut(s) 272, 950
Aor13HI TCCGGA 1 cut(s) 907
AoxI GGCC 2 cut(s) 426, 630
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 4 cut(s) 97, 585, 862, 986
ArsI GACNNNNNNTTYG 2 cut(s) 917, 949
Asp700I GAANNNNTTC 1 cut(s) 1046
AspLEI GCGC 2 cut(s) 336, 834
AspS9I GGNCC 2 cut(s) 319, 630
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 156, 1037
AvaI CYCGRG 2 cut(s) 272, 950
AvaII GGWCC 1 cut(s) 319
BalI TGGCCA 1 cut(s) 428
BanII GRGCYC 4 cut(s) 82, 196, 219, 465
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 2 cut(s) 546, 1024
Bbv12I GWGCWC 3 cut(s) 82, 219, 465
BbvI GCAGC 1 cut(s) 23
BccI CCATC 6 cut(s) 269, 410, 666, 773, 794, 1016
BceAI ACGGC 4 cut(s) 249, 294, 386, 917
BciT130I CCWGG 1 cut(s) 1039
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 257, 269
BfaI CTAG 1 cut(s) 617
BisI GCNGC 3 cut(s) 37, 237, 394
BlsI GCNGC 3 cut(s) 38, 238, 395
Bme1390I CCNGG 2 cut(s) 221, 1039
Bme18I GGWCC 1 cut(s) 319
BmeT110I CYCGRG 2 cut(s) 272, 950
BmgBI CACGTC 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 319, 630
BmiI GGNNCC 4 cut(s) 193, 259, 321, 631
BmrFI CCNGG 2 cut(s) 221, 1039
BmsI GCATC 3 cut(s) 345, 928, 1006
BpiI GAAGAC 2 cut(s) 546, 1024
BpmI CTGGAG 2 cut(s) 734, 875
BpuEI CTTGAG 2 cut(s) 452, 836
BpuMI CCSGG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 1037
BsaWI WCCGGW 1 cut(s) 907
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 408, 1043
Bse1I ACTGG 3 cut(s) 212, 429, 835
Bse3DI GCAATG 1 cut(s) 592
BseAI TCCGGA 1 cut(s) 907
BseBI CCWGG 1 cut(s) 1039
BseDI CCNNGG 1 cut(s) 1037
BseGI GGATG 2 cut(s) 267, 916
BseLI CCNNNNNNNGG 3 cut(s) 277, 408, 1043
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 212, 429, 835
BseRI GAGGAG 3 cut(s) 140, 455, 707
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 2 cut(s) 428, 632
BsiHKAI GWGCWC 3 cut(s) 82, 219, 465
BsiHKCI CYCGRG 2 cut(s) 272, 950
BsiSI CCGG 2 cut(s) 221, 908
BslI CCNNNNNNNGG 3 cut(s) 277, 408, 1043
BsmAI GTCTC 2 cut(s) 257, 269
BsmBI CGTCTC 2 cut(s) 257, 269
BsnI GGCC 2 cut(s) 428, 632
BsoBI CYCGRG 2 cut(s) 272, 950
Bsp1286I GDGCHC 4 cut(s) 82, 196, 219, 465
Bsp13I TCCGGA 1 cut(s) 907
Bsp143I GATC 6 cut(s) 198, 240, 358, 406, 826, 959
BspACI CCGC 5 cut(s) 189, 236, 349, 394, 599
BspANI GGCC 2 cut(s) 428, 632
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 907
BspFNI CGCG 1 cut(s) 351
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 4 cut(s) 193, 259, 321, 631
BspPI GGATC 3 cut(s) 193, 235, 967
BsrBI CCGCTC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 592
BsrI ACTGG 3 cut(s) 212, 429, 835
BssECI CCNNGG 1 cut(s) 1037
BssMI GATC 6 cut(s) 198, 240, 358, 406, 826, 959
BssNI GRCGYC 1 cut(s) 228
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 1039
Bst4CI ACNGT 4 cut(s) 570, 668, 680, 946
BstACI GRCGYC 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 599, 708, 785
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 267, 916
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 2 cut(s) 336, 834
BstKTI GATC 6 cut(s) 201, 243, 361, 409, 829, 962
BstMAI GTCTC 2 cut(s) 257, 269
BstMBI GATC 6 cut(s) 198, 240, 358, 406, 826, 959
BstMWI GCNNNNNNNGC 1 cut(s) 829
BstNI CCWGG 1 cut(s) 1039
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 2 cut(s) 219, 1037
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 23
BstV2I GAAGAC 2 cut(s) 546, 1024
BsuRI GGCC 2 cut(s) 428, 632
BtgZI GCGATG 1 cut(s) 429
BtrI CACGTC 1 cut(s) 300
BtsCI GGATG 2 cut(s) 267, 916
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 5 cut(s) 477, 555, 566, 653, 842
Cac8I GCNNGC 3 cut(s) 599, 708, 785
CaiI CAGNNNCTG 2 cut(s) 312, 977
CciI TCATGA 1 cut(s) 373
CfoI GCGC 2 cut(s) 336, 834
Cfr13I GGNCC 2 cut(s) 319, 630
CseI GACGC 1 cut(s) 298
Csp6I GTAC 4 cut(s) 304, 472, 676, 955
CviAII CATG 7 cut(s) 186, 328, 374, 608, 689, 707, 1006
CviQI GTAC 4 cut(s) 304, 472, 676, 955
DdeI CTNAG 1 cut(s) 282
DpnI GATC 6 cut(s) 200, 242, 360, 408, 828, 961
DpnII GATC 6 cut(s) 198, 240, 358, 406, 826, 959
EaeI YGGCCR 1 cut(s) 426
Ecl136II GAGCTC 3 cut(s) 80, 217, 463
Eco24I GRGCYC 4 cut(s) 82, 196, 219, 465
Eco47I GGWCC 1 cut(s) 319
Eco53kI GAGCTC 3 cut(s) 80, 217, 463
Eco57I CTGAAG 1 cut(s) 999
Eco88I CYCGRG 2 cut(s) 272, 950
EcoICRI GAGCTC 3 cut(s) 80, 217, 463
EcoO109I RGGNCCY 2 cut(s) 319, 630
EcoRII CCWGG 1 cut(s) 1037
EcoT22I ATGCAT 1 cut(s) 735
EcoT38I GRGCYC 4 cut(s) 82, 196, 219, 465
Esp3I CGTCTC 2 cut(s) 257, 269
FaeI CATG 7 cut(s) 189, 331, 377, 611, 692, 710, 1009
FatI CATG 7 cut(s) 185, 327, 373, 607, 688, 706, 1005
FauI CCCGC 1 cut(s) 606
FblI GTMKAC 2 cut(s) 342, 505
Fnu4HI GCNGC 3 cut(s) 37, 237, 394
FokI GGATG 2 cut(s) 254, 923
FriOI GRGCYC 4 cut(s) 82, 196, 219, 465
Fsp4HI GCNGC 3 cut(s) 37, 237, 394
FspBI CTAG 1 cut(s) 617
GlaI GCGC 2 cut(s) 335, 833
GluI GCNGC 3 cut(s) 37, 237, 394
GsuI CTGGAG 2 cut(s) 734, 875
HaeIII GGCC 2 cut(s) 428, 632
HapII CCGG 2 cut(s) 221, 908
HgaI GACGC 1 cut(s) 298
HhaI GCGC 2 cut(s) 336, 834
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 7 cut(s) 189, 331, 377, 611, 692, 710, 1009
Hin6I GCGC 2 cut(s) 334, 832
HinP1I GCGC 2 cut(s) 334, 832
HincII GTYRAC 2 cut(s) 19, 343
HindII GTYRAC 2 cut(s) 19, 343
HinfI GANTC 3 cut(s) 443, 818, 914
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 2 cut(s) 221, 908
HphI GGTGA 2 cut(s) 156, 1037
Hpy166II GTNNAC 3 cut(s) 19, 343, 506
Hpy188I TCNGA 6 cut(s) 203, 257, 285, 411, 500, 964
Hpy8I GTNNAC 3 cut(s) 19, 343, 506
Hpy99I CGWCG 2 cut(s) 344, 356
HpyAV CCTTC 3 cut(s) 177, 280, 457
HpyCH4III ACNGT 4 cut(s) 570, 668, 680, 946
HpyCH4IV ACGT 2 cut(s) 228, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 829
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 2 cut(s) 228, 299
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 7 cut(s) 189, 331, 377, 611, 692, 710, 1009
HspAI GCGC 2 cut(s) 334, 832
Kpn2I TCCGGA 1 cut(s) 907
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 6 cut(s) 198, 240, 358, 406, 826, 959
LmnI GCTCC 6 cut(s) 191, 214, 222, 257, 411, 468
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 3 cut(s) 345, 928, 1006
MaeI CTAG 1 cut(s) 617
MaeII ACGT 2 cut(s) 228, 299
MaeIII GTNAC 4 cut(s) 8, 229, 698, 839
MalI GATC 6 cut(s) 200, 242, 360, 408, 828, 961
MbiI CCGCTC 1 cut(s) 601
MboI GATC 6 cut(s) 198, 240, 358, 406, 826, 959
MboII GAAGA 3 cut(s) 397, 546, 1024
MhlI GDGCHC 4 cut(s) 82, 196, 219, 465
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 7 cut(s) 97, 422, 585, 736, 862, 888, 986
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 552
Mox20I TGGCCA 1 cut(s) 428
Mph1103I ATGCAT 1 cut(s) 735
MroI TCCGGA 1 cut(s) 907
MroXI GAANNNNTTC 1 cut(s) 1046
MscI TGGCCA 1 cut(s) 428
MseI TTAA 4 cut(s) 18, 30, 849, 891
Msp20I TGGCCA 1 cut(s) 428
MspI CCGG 2 cut(s) 221, 908
MspR9I CCNGG 2 cut(s) 221, 1039
MvaI CCWGG 1 cut(s) 1039
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 829
NciI CCSGG 1 cut(s) 221
NdeII GATC 6 cut(s) 198, 240, 358, 406, 826, 959
NlaIII CATG 7 cut(s) 189, 331, 377, 611, 692, 710, 1009
NlaIV GGNNCC 4 cut(s) 193, 259, 321, 631
NmuCI GTSAC 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 735
NspI RCATGY 1 cut(s) 710
PaeI GCATGC 1 cut(s) 710
PaeR7I CTCGAG 2 cut(s) 272, 950
PagI TCATGA 1 cut(s) 373
PcsI WCGNNNNNNNCGW 4 cut(s) 261, 270, 348, 514
PdmI GAANNNNTTC 1 cut(s) 1046
PfeI GAWTC 2 cut(s) 443, 914
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 3 cut(s) 38, 238, 395
PleI GAGTC 1 cut(s) 826
PpsI GAGTC 1 cut(s) 826
PpuMI RGGWCCY 1 cut(s) 319
Psp124BI GAGCTC 3 cut(s) 82, 219, 465
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 1037
PspGI CCWGG 1 cut(s) 1037
PspN4I GGNNCC 4 cut(s) 193, 259, 321, 631
PspPI GGNCC 2 cut(s) 319, 630
PspPPI RGGWCCY 1 cut(s) 319
PstNI CAGNNNCTG 2 cut(s) 312, 977
RsaI GTAC 4 cut(s) 305, 473, 677, 956
RsaNI GTAC 4 cut(s) 304, 472, 676, 955
SacI GAGCTC 3 cut(s) 82, 219, 465
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 4 cut(s) 18, 30, 849, 891
SatI GCNGC 3 cut(s) 37, 237, 394
Sau3AI GATC 6 cut(s) 198, 240, 358, 406, 826, 959
Sau96I GGNCC 2 cut(s) 319, 630
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 2 cut(s) 221, 1039
SduI GDGCHC 4 cut(s) 82, 196, 219, 465
SfaNI GCATC 3 cut(s) 345, 928, 1006
Sfr274I CTCGAG 2 cut(s) 272, 950
SinI GGWCC 1 cut(s) 319
SlaI CTCGAG 2 cut(s) 272, 950
SmlI CTYRAG 4 cut(s) 272, 467, 815, 950
SmoI CTYRAG 4 cut(s) 272, 467, 815, 950
SphI GCATGC 1 cut(s) 710
Sse9I AATT 7 cut(s) 97, 422, 585, 736, 862, 888, 986
SsiI CCGC 5 cut(s) 189, 236, 349, 394, 599
SspI AATATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 617
SstI GAGCTC 3 cut(s) 82, 219, 465
StyD4I CCNGG 2 cut(s) 219, 1037
TaaI ACNGT 4 cut(s) 570, 668, 680, 946
TaiI ACGT 2 cut(s) 231, 302
TaqI TCGA 7 cut(s) 264, 273, 342, 441, 670, 951, 984
TasI AATT 7 cut(s) 97, 422, 585, 736, 862, 888, 986
TatI WGTACW 1 cut(s) 471
TauI GCSGC 2 cut(s) 239, 396
TfiI GAWTC 2 cut(s) 443, 914
Tru1I TTAA 4 cut(s) 18, 30, 849, 891
Tru9I TTAA 4 cut(s) 18, 30, 849, 891
TscAI CASTG 5 cut(s) 484, 555, 573, 660, 842
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 4 cut(s) 159, 362, 624, 994
TspGWI ACGGA 2 cut(s) 227, 972
TspRI CASTG 5 cut(s) 484, 555, 573, 660, 842
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 4 cut(s) 97, 585, 862, 986
XbaI TCTAGA 1 cut(s) 616
XceI RCATGY 1 cut(s) 710
XhoI CTCGAG 2 cut(s) 272, 950
XmiI GTMKAC 2 cut(s) 342, 505
XmnI GAANNNNTTC 1 cut(s) 1046
XspI CTAG 1 cut(s) 617
ZraI GACGTC 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.