Rh5BG117400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018618
Physical Location & Seq
Forward (+)
11038685 .. 11040384
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG117400.1

Sequence Viewer

Length: 927 bp
ATGTCCTCACCTTCATCTCCAAAACGACCATGCGGAGCCCCGATCCGAAACTGGACGGAGCTCCCGGAGGACGTCACGGCGGCGATCCTCTCCCGTCTCGGAGCCATCGACATCCTCGAGACGGCTCAGAAGGTCTGCAAGACGTGGTACAAAGTCTGCAAGGACCCTCTCATGTGGCGCATCGTCGACTTCCGCGACGATGATCTCCACAAAGTTCATGACTTGGGGAAGATGTGCCGCTACGCCGTTGATCGGAGCGATGGGAAATTGGCTAGTATCAATCTCGATTCCTTCGCCACCGATGAGCTCCTCAACTACATCACTGATAGTTCAAGTGAAATCAGATGTCTACGACTTGTGCGTTGCGACATAACAAGTGAGGGACTGAGTGCAGTGTCTTCAAGACTTCCACTGTTGGAGGAACTTGAAATTTCACATTGCTCGCTCTCACATGAAACTCTGGAAGTGGTTGGGGCCTCTTGTCCTCTTTTGAAATCACTGAAACTCAACAGTCAATGGTACAGTTTCGCCCATGAGGAGTGTAACAAGCATGCACTTGCTATAGCAGGAACAATGCATAATTTACGCCACCTCCAAATTTTTGCGAATAAGCTGACTAATGATGGCTTGCGGGCTATACTTGATGGTTGTCCTCCACTTGAGTCACTTGATCTGCGCCAGTGTTACAATCTTAATCTGGAGGAAGATTTTGAGAAAAGATTGGTGGAACGAATTAAACTATTACGGCTTCCTGATGATTCAACTGATGACTATGAGTTTGATGCTACGGTTCTCGAGTACGGATCAGATAATGCAGAGCCTGAAGTCGAATTTTTTGACGAAATGTTCATGGTAGATGATGCAGATGGTGAAGTCTTCCCCTGGAATGGTTTCGTTGAGTTTGAGGATTTCTATTACTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

308

Amino Acids

35.15

Weight (kDa)

4.61

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 18 - 64 1.1e-09 F-box-like
F-box PF00646 18 - 60 8.7e-07 F-box domain
LRR_At5g56370 PF24758 111 - 177 6.8e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018618)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0015231
rosa_laevigata RLG00000032178 RLG00000032179
rosa_multiflora Rmu_sc0002209.1_g000023
rosa_roxburghii Rroxscaffold_1G00061340
rosa_rugosa Rorug05G0024800
rosa_samantha Rh5BG117400 Rh5CG128500 Rh5DG116500
rosa_wichuraiana Rw5G010310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccI GTMKAC 2 cut(s) 186, 349
AccII CGCG 1 cut(s) 195
AciI CCGC 5 cut(s) 33, 80, 193, 238, 631
AclWI GGATC 3 cut(s) 37, 79, 811
AcsI RAATTY 3 cut(s) 429, 597, 830
AcuI CTGAAG 1 cut(s) 843
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 149, 521, 800
AfiI CCNNNNNNNGG 3 cut(s) 121, 252, 887
AgsI TTSAA 5 cut(s) 333, 402, 428, 493, 762
AjiI CACGTC 1 cut(s) 144
AjnI CCWGG 1 cut(s) 881
AluBI AGCT 3 cut(s) 61, 307, 613
AluI AGCT 3 cut(s) 61, 307, 613
Alw21I GWGCWC 2 cut(s) 63, 309
Alw26I GTCTC 2 cut(s) 101, 113
AlwI GGATC 3 cut(s) 37, 79, 811
AlwNI CAGNNNCTG 1 cut(s) 821
Ama87I CYCGRG 2 cut(s) 116, 794
AoxI GGCC 1 cut(s) 474
ApoI RAATTY 3 cut(s) 429, 597, 830
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
Asp700I GAANNNNTTC 1 cut(s) 890
AspLEI GCGC 2 cut(s) 180, 678
AspS9I GGNCC 2 cut(s) 163, 474
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 881
AvaI CYCGRG 2 cut(s) 116, 794
AvaII GGWCC 1 cut(s) 163
BanII GRGCYC 3 cut(s) 40, 63, 309
BbsI GAAGAC 2 cut(s) 390, 868
Bbv12I GWGCWC 2 cut(s) 63, 309
BccI CCATC 5 cut(s) 113, 254, 617, 638, 860
BceAI ACGGC 4 cut(s) 93, 138, 230, 761
BciT130I CCWGG 1 cut(s) 883
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 101, 113
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 561
BisI GCNGC 2 cut(s) 81, 238
BlsI GCNGC 2 cut(s) 82, 239
Bme1390I CCNGG 2 cut(s) 65, 883
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 2 cut(s) 116, 794
BmgBI CACGTC 1 cut(s) 144
BmgT120I GGNCC 2 cut(s) 163, 474
BmiI GGNNCC 4 cut(s) 37, 103, 165, 475
BmrFI CCNGG 2 cut(s) 65, 883
BmsI GCATC 3 cut(s) 189, 772, 850
BpiI GAAGAC 2 cut(s) 390, 868
BpmI CTGGAG 1 cut(s) 719
BpuEI CTTGAG 1 cut(s) 680
BpuMI CCSGG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 881
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 252, 887
Bse1I ACTGG 2 cut(s) 56, 679
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 883
BseDI CCNNGG 1 cut(s) 881
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 121, 252, 887
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 140, 377
BseNI ACTGG 2 cut(s) 56, 679
BseRI GAGGAG 2 cut(s) 299, 551
BsgI GTGCAG 1 cut(s) 411
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 476
BsiHKAI GWGCWC 2 cut(s) 63, 309
BsiHKCI CYCGRG 2 cut(s) 116, 794
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 3 cut(s) 121, 252, 887
BsmAI GTCTC 2 cut(s) 101, 113
BsmBI CGTCTC 2 cut(s) 101, 113
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 1 cut(s) 476
BsoBI CYCGRG 2 cut(s) 116, 794
Bsp1286I GDGCHC 3 cut(s) 40, 63, 309
Bsp143I GATC 6 cut(s) 42, 84, 202, 250, 670, 803
BspACI CCGC 5 cut(s) 33, 80, 193, 238, 631
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 2 cut(s) 139, 378
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 4 cut(s) 37, 103, 165, 475
BspPI GGATC 3 cut(s) 37, 79, 811
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 2 cut(s) 56, 679
BssECI CCNNGG 1 cut(s) 881
BssMI GATC 6 cut(s) 42, 84, 202, 250, 670, 803
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 883
Bst4CI ACNGT 4 cut(s) 414, 512, 524, 790
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 4 cut(s) 443, 552, 629, 633
BstDEI CTNAG 2 cut(s) 126, 386
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 2 cut(s) 180, 678
BstKTI GATC 6 cut(s) 45, 87, 205, 253, 673, 806
BstMAI GTCTC 2 cut(s) 101, 113
BstMBI GATC 6 cut(s) 42, 84, 202, 250, 670, 803
BstNI CCWGG 1 cut(s) 883
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 2 cut(s) 63, 881
BstSFI CTRYAG 1 cut(s) 561
BstUI CGCG 1 cut(s) 195
BstV2I GAAGAC 2 cut(s) 390, 868
BsuRI GGCC 1 cut(s) 476
BtgZI GCGATG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 5 cut(s) 321, 399, 410, 497, 686
Cac8I GCNNGC 4 cut(s) 443, 552, 629, 633
CaiI CAGNNNCTG 1 cut(s) 821
CciI TCATGA 1 cut(s) 217
CfoI GCGC 2 cut(s) 180, 678
Cfr13I GGNCC 2 cut(s) 163, 474
Csp6I GTAC 3 cut(s) 148, 520, 799
CviAII CATG 7 cut(s) 30, 172, 218, 452, 533, 551, 850
CviQI GTAC 3 cut(s) 148, 520, 799
DdeI CTNAG 2 cut(s) 126, 386
DpnI GATC 6 cut(s) 44, 86, 204, 252, 672, 805
DpnII GATC 6 cut(s) 42, 84, 202, 250, 670, 803
Ecl136II GAGCTC 2 cut(s) 61, 307
Eco24I GRGCYC 3 cut(s) 40, 63, 309
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 2 cut(s) 61, 307
Eco57I CTGAAG 1 cut(s) 843
Eco88I CYCGRG 2 cut(s) 116, 794
EcoICRI GAGCTC 2 cut(s) 61, 307
EcoO109I RGGNCCY 2 cut(s) 163, 474
EcoRII CCWGG 1 cut(s) 881
EcoT22I ATGCAT 1 cut(s) 579
EcoT38I GRGCYC 3 cut(s) 40, 63, 309
Esp3I CGTCTC 2 cut(s) 101, 113
FaeI CATG 7 cut(s) 33, 175, 221, 455, 536, 554, 853
FaqI GGGAC 1 cut(s) 396
FatI CATG 7 cut(s) 29, 171, 217, 451, 532, 550, 849
FauI CCCGC 1 cut(s) 624
FblI GTMKAC 2 cut(s) 186, 349
Fnu4HI GCNGC 2 cut(s) 81, 238
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 3 cut(s) 40, 63, 309
Fsp4HI GCNGC 2 cut(s) 81, 238
FspBI CTAG 1 cut(s) 273
GlaI GCGC 2 cut(s) 179, 677
GluI GCNGC 2 cut(s) 81, 238
GsuI CTGGAG 1 cut(s) 719
HaeIII GGCC 1 cut(s) 476
HapII CCGG 1 cut(s) 65
HhaI GCGC 2 cut(s) 180, 678
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 7 cut(s) 33, 175, 221, 455, 536, 554, 853
Hin6I GCGC 2 cut(s) 178, 676
HinP1I GCGC 2 cut(s) 178, 676
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 3 cut(s) 287, 662, 758
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 881
Hpy166II GTNNAC 2 cut(s) 187, 350
Hpy188I TCNGA 6 cut(s) 47, 101, 129, 255, 344, 808
Hpy188III TCNNGA 8 cut(s) 118, 218, 284, 402, 461, 698, 752, 794
Hpy8I GTNNAC 2 cut(s) 187, 350
Hpy99I CGWCG 2 cut(s) 188, 200
HpyAV CCTTC 3 cut(s) 21, 124, 301
HpyCH4III ACNGT 4 cut(s) 414, 512, 524, 790
HpyCH4IV ACGT 2 cut(s) 72, 143
HpyCH4V TGCA 7 cut(s) 138, 159, 392, 554, 577, 815, 863
HpyF3I CTNAG 2 cut(s) 126, 386
HpySE526I ACGT 2 cut(s) 72, 143
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 7 cut(s) 33, 175, 221, 455, 536, 554, 853
HspAI GCGC 2 cut(s) 178, 676
Kzo9I GATC 6 cut(s) 42, 84, 202, 250, 670, 803
LmnI GCTCC 6 cut(s) 35, 58, 66, 101, 255, 312
LweI GCATC 3 cut(s) 189, 772, 850
MaeI CTAG 1 cut(s) 273
MaeII ACGT 2 cut(s) 72, 143
MaeIII GTNAC 4 cut(s) 73, 542, 663, 683
MalI GATC 6 cut(s) 44, 86, 204, 252, 672, 805
MboI GATC 6 cut(s) 42, 84, 202, 250, 670, 803
MboII GAAGA 4 cut(s) 241, 390, 716, 868
MhlI GDGCHC 3 cut(s) 40, 63, 309
MluCI AATT 6 cut(s) 266, 429, 580, 597, 732, 830
MlyI GAGTC 1 cut(s) 671
MmeI TCCRAC 1 cut(s) 396
Mph1103I ATGCAT 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 890
MseI TTAA 2 cut(s) 693, 735
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 65, 883
MvaI CCWGG 1 cut(s) 883
MvnI CGCG 1 cut(s) 195
NciI CCSGG 1 cut(s) 65
NdeII GATC 6 cut(s) 42, 84, 202, 250, 670, 803
NlaIII CATG 7 cut(s) 33, 175, 221, 455, 536, 554, 853
NlaIV GGNNCC 4 cut(s) 37, 103, 165, 475
NmuCI GTSAC 2 cut(s) 73, 663
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 1 cut(s) 554
PaeI GCATGC 1 cut(s) 554
PaeR7I CTCGAG 2 cut(s) 116, 794
PagI TCATGA 1 cut(s) 217
PcsI WCGNNNNNNNCGW 4 cut(s) 105, 114, 192, 358
PdmI GAANNNNTTC 1 cut(s) 890
PfeI GAWTC 2 cut(s) 287, 758
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 2 cut(s) 82, 239
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
PpuMI RGGWCCY 1 cut(s) 163
Psp124BI GAGCTC 2 cut(s) 63, 309
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 881
PspGI CCWGG 1 cut(s) 881
PspN4I GGNNCC 4 cut(s) 37, 103, 165, 475
PspPI GGNCC 2 cut(s) 163, 474
PspPPI RGGWCCY 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 821
RsaI GTAC 3 cut(s) 149, 521, 800
RsaNI GTAC 3 cut(s) 148, 520, 799
SacI GAGCTC 2 cut(s) 63, 309
SalI GTCGAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 693, 735
SatI GCNGC 2 cut(s) 81, 238
Sau3AI GATC 6 cut(s) 42, 84, 202, 250, 670, 803
Sau96I GGNCC 2 cut(s) 163, 474
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 2 cut(s) 65, 883
SduI GDGCHC 3 cut(s) 40, 63, 309
SetI ASST 8 cut(s) 13, 63, 75, 135, 146, 309, 594, 615
SfaNI GCATC 3 cut(s) 189, 772, 850
SfcI CTRYAG 1 cut(s) 561
Sfr274I CTCGAG 2 cut(s) 116, 794
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 2 cut(s) 116, 794
SmlI CTYRAG 3 cut(s) 116, 659, 794
SmoI CTYRAG 3 cut(s) 116, 659, 794
SphI GCATGC 1 cut(s) 554
Sse9I AATT 6 cut(s) 266, 429, 580, 597, 732, 830
SsiI CCGC 5 cut(s) 33, 80, 193, 238, 631
SspMI CTAG 1 cut(s) 273
SstI GAGCTC 2 cut(s) 63, 309
StyD4I CCNGG 2 cut(s) 63, 881
TaaI ACNGT 4 cut(s) 414, 512, 524, 790
TaiI ACGT 2 cut(s) 75, 146
TaqI TCGA 6 cut(s) 108, 117, 186, 285, 795, 828
TasI AATT 6 cut(s) 266, 429, 580, 597, 732, 830
TauI GCSGC 2 cut(s) 83, 240
TfiI GAWTC 2 cut(s) 287, 758
Tru1I TTAA 2 cut(s) 693, 735
Tru9I TTAA 2 cut(s) 693, 735
TscAI CASTG 5 cut(s) 328, 399, 417, 504, 686
TseFI GTSAC 2 cut(s) 73, 663
Tsp45I GTSAC 2 cut(s) 73, 663
TspDTI ATGAA 3 cut(s) 206, 468, 838
TspGWI ACGGA 2 cut(s) 71, 816
TspRI CASTG 5 cut(s) 328, 399, 417, 504, 686
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 3 cut(s) 429, 597, 830
XceI RCATGY 1 cut(s) 554
XhoI CTCGAG 2 cut(s) 116, 794
XmiI GTMKAC 2 cut(s) 186, 349
XmnI GAANNNNTTC 1 cut(s) 890
XspI CTAG 1 cut(s) 273
ZraI GACGTC 1 cut(s) 73
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.