Rh5CG128500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018618
Physical Location & Seq
Forward (+)
10712010 .. 10715415
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG128500.1

Sequence Viewer

Length: 1083 bp
ATGGTTTGTTACTTTGTTAACCATAATATTAAATGCTGCCCAAATGCAACTGCAACACCCACATCTCTAAAACCACGAGCTCTCCATTTTCCCCCAAATTCACGAAGCCCAAATCTTTCCTCTAATCCCAAACCTTTCAACCAAGCTCTCCTCTTTATGTCCTCACCTTCATCTCCAAAACGACCATGCGGAGCCCCGATCCGAAACTGGACGGAGCTCCCGGAGGACGTCACGGCGGCGATCCTCTCCCGTCTCGGAGCCATCGACATCCTCGAGACGGCTCAGAAGGTCTGCAAGACGTGGTACAGCGTCTGCAAGGACCCTCTCATGTGGCGCATCGTCGACTTCCGCGACGATGATCTCCACAAAGTTCATGACTTGGGGAAGATGTGCCGCTACGCCGTTGATCGGAGCGATGGGAAATTGGCCAGTATCAATCTCGATTCCTTCGCCACCGATGAGCTCCTCAAGTACATCACTGATAGTTCAAGTGAAATCAGATGTCTACGACTTGTGCGTTGCAACATAACAAGTGAGGGATTGAGTGCAGTGTCTTCAAGACTTCCACTGTTGGAGGAACTTGAAATTTCACATTGCCCGCTCTCACATGAAACTCTAGAAGTGGTTGGGGCCTCTTGTCCTCTTTTGAAATCACTGAAACTCAACAGTCGATGGTACAGTTTCGCCCATGAGGAGTGTAACAAGCATGCACTTGCCATAGCAGGAACAATGCATAATTTATGCCACCTCCAGATTTTTGCGAATAAGCTGACTAATGATGGCTTGCAGACTATACTTGATGGTTGTCCTCCACTTGAGTCGCTTGATCTGCGCCAGTGTTACAATCTTAATCTGGAGGAAAATTTTGAGAAAAGATTGGTGGCACGAATTAAACTTTTACGGCTTCCGGATGATTCAACTGATGACTATGAGTTTGATGCTACGGTTCTCGAGTACGGATCAGATAATCCAGAGCCTGAAGTCGAATTTTTTGACGAAATGTTCATGGTAGATGATGCAGATGGTGAAGTCTTCCCCTGGAATGGTTTCGTTGAGTTTGAGGATTTCTATTACTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

360

Amino Acids

40.84

Weight (kDa)

4.97

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 70 - 116 1e-09 F-box-like
F-box PF00646 70 - 112 3.2e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018618)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0015231
rosa_laevigata RLG00000032178 RLG00000032179
rosa_multiflora Rmu_sc0002209.1_g000023
rosa_roxburghii Rroxscaffold_1G00061340
rosa_rugosa Rorug05G0024800
rosa_samantha Rh5BG117400 Rh5CG128500 Rh5DG116500
rosa_wichuraiana Rw5G010310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 601
AccI GTMKAC 2 cut(s) 342, 505
AccII CGCG 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 907
AciI CCGC 5 cut(s) 189, 236, 349, 394, 599
AclWI GGATC 3 cut(s) 193, 235, 967
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 4 cut(s) 97, 585, 862, 986
AcuI CTGAAG 1 cut(s) 999
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 4 cut(s) 305, 473, 677, 956
AfiI CCNNNNNNNGG 3 cut(s) 277, 408, 1043
AgsI TTSAA 6 cut(s) 139, 489, 558, 584, 649, 918
AjiI CACGTC 1 cut(s) 300
AjnI CCWGG 1 cut(s) 1037
AluBI AGCT 5 cut(s) 80, 146, 217, 463, 769
AluI AGCT 5 cut(s) 80, 146, 217, 463, 769
Alw21I GWGCWC 3 cut(s) 82, 219, 465
Alw26I GTCTC 2 cut(s) 257, 269
AlwI GGATC 3 cut(s) 193, 235, 967
AlwNI CAGNNNCTG 2 cut(s) 312, 977
Ama87I CYCGRG 2 cut(s) 272, 950
Aor13HI TCCGGA 1 cut(s) 907
AoxI GGCC 2 cut(s) 426, 630
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 4 cut(s) 97, 585, 862, 986
ArsI GACNNNNNNTTYG 2 cut(s) 917, 949
Asp700I GAANNNNTTC 1 cut(s) 1046
AspLEI GCGC 2 cut(s) 336, 834
AspS9I GGNCC 2 cut(s) 319, 630
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 156, 1037
AvaI CYCGRG 2 cut(s) 272, 950
AvaII GGWCC 1 cut(s) 319
BalI TGGCCA 1 cut(s) 428
BanII GRGCYC 4 cut(s) 82, 196, 219, 465
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 2 cut(s) 546, 1024
Bbv12I GWGCWC 3 cut(s) 82, 219, 465
BbvI GCAGC 1 cut(s) 23
BccI CCATC 6 cut(s) 269, 410, 666, 773, 794, 1016
BceAI ACGGC 4 cut(s) 249, 294, 386, 917
BciT130I CCWGG 1 cut(s) 1039
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 257, 269
BfaI CTAG 1 cut(s) 617
BisI GCNGC 3 cut(s) 37, 237, 394
BlsI GCNGC 3 cut(s) 38, 238, 395
Bme1390I CCNGG 2 cut(s) 221, 1039
Bme18I GGWCC 1 cut(s) 319
BmeT110I CYCGRG 2 cut(s) 272, 950
BmgBI CACGTC 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 319, 630
BmiI GGNNCC 4 cut(s) 193, 259, 321, 631
BmrFI CCNGG 2 cut(s) 221, 1039
BmsI GCATC 3 cut(s) 345, 928, 1006
BpiI GAAGAC 2 cut(s) 546, 1024
BpmI CTGGAG 2 cut(s) 734, 875
BpuEI CTTGAG 2 cut(s) 452, 836
BpuMI CCSGG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 1037
BsaWI WCCGGW 1 cut(s) 907
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 408, 1043
Bse1I ACTGG 3 cut(s) 212, 429, 835
Bse3DI GCAATG 1 cut(s) 592
BseAI TCCGGA 1 cut(s) 907
BseBI CCWGG 1 cut(s) 1039
BseDI CCNNGG 1 cut(s) 1037
BseGI GGATG 2 cut(s) 267, 916
BseLI CCNNNNNNNGG 3 cut(s) 277, 408, 1043
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 212, 429, 835
BseRI GAGGAG 3 cut(s) 140, 455, 707
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 2 cut(s) 428, 632
BsiHKAI GWGCWC 3 cut(s) 82, 219, 465
BsiHKCI CYCGRG 2 cut(s) 272, 950
BsiSI CCGG 2 cut(s) 221, 908
BslI CCNNNNNNNGG 3 cut(s) 277, 408, 1043
BsmAI GTCTC 2 cut(s) 257, 269
BsmBI CGTCTC 2 cut(s) 257, 269
BsnI GGCC 2 cut(s) 428, 632
BsoBI CYCGRG 2 cut(s) 272, 950
Bsp1286I GDGCHC 4 cut(s) 82, 196, 219, 465
Bsp13I TCCGGA 1 cut(s) 907
Bsp143I GATC 6 cut(s) 198, 240, 358, 406, 826, 959
BspACI CCGC 5 cut(s) 189, 236, 349, 394, 599
BspANI GGCC 2 cut(s) 428, 632
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 907
BspFNI CGCG 1 cut(s) 351
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 4 cut(s) 193, 259, 321, 631
BspPI GGATC 3 cut(s) 193, 235, 967
BsrBI CCGCTC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 592
BsrI ACTGG 3 cut(s) 212, 429, 835
BssECI CCNNGG 1 cut(s) 1037
BssMI GATC 6 cut(s) 198, 240, 358, 406, 826, 959
BssNI GRCGYC 1 cut(s) 228
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 1039
Bst4CI ACNGT 4 cut(s) 570, 668, 680, 946
BstACI GRCGYC 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 599, 708, 785
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 267, 916
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 2 cut(s) 336, 834
BstKTI GATC 6 cut(s) 201, 243, 361, 409, 829, 962
BstMAI GTCTC 2 cut(s) 257, 269
BstMBI GATC 6 cut(s) 198, 240, 358, 406, 826, 959
BstMWI GCNNNNNNNGC 1 cut(s) 829
BstNI CCWGG 1 cut(s) 1039
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 2 cut(s) 219, 1037
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 23
BstV2I GAAGAC 2 cut(s) 546, 1024
BsuRI GGCC 2 cut(s) 428, 632
BtgZI GCGATG 1 cut(s) 429
BtrI CACGTC 1 cut(s) 300
BtsCI GGATG 2 cut(s) 267, 916
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 5 cut(s) 477, 555, 566, 653, 842
Cac8I GCNNGC 3 cut(s) 599, 708, 785
CaiI CAGNNNCTG 2 cut(s) 312, 977
CciI TCATGA 1 cut(s) 373
CfoI GCGC 2 cut(s) 336, 834
Cfr13I GGNCC 2 cut(s) 319, 630
CseI GACGC 1 cut(s) 298
Csp6I GTAC 4 cut(s) 304, 472, 676, 955
CviAII CATG 7 cut(s) 186, 328, 374, 608, 689, 707, 1006
CviQI GTAC 4 cut(s) 304, 472, 676, 955
DdeI CTNAG 1 cut(s) 282
DpnI GATC 6 cut(s) 200, 242, 360, 408, 828, 961
DpnII GATC 6 cut(s) 198, 240, 358, 406, 826, 959
EaeI YGGCCR 1 cut(s) 426
Ecl136II GAGCTC 3 cut(s) 80, 217, 463
Eco24I GRGCYC 4 cut(s) 82, 196, 219, 465
Eco47I GGWCC 1 cut(s) 319
Eco53kI GAGCTC 3 cut(s) 80, 217, 463
Eco57I CTGAAG 1 cut(s) 999
Eco88I CYCGRG 2 cut(s) 272, 950
EcoICRI GAGCTC 3 cut(s) 80, 217, 463
EcoO109I RGGNCCY 2 cut(s) 319, 630
EcoRII CCWGG 1 cut(s) 1037
EcoT22I ATGCAT 1 cut(s) 735
EcoT38I GRGCYC 4 cut(s) 82, 196, 219, 465
Esp3I CGTCTC 2 cut(s) 257, 269
FaeI CATG 7 cut(s) 189, 331, 377, 611, 692, 710, 1009
FatI CATG 7 cut(s) 185, 327, 373, 607, 688, 706, 1005
FauI CCCGC 1 cut(s) 606
FblI GTMKAC 2 cut(s) 342, 505
Fnu4HI GCNGC 3 cut(s) 37, 237, 394
FokI GGATG 2 cut(s) 254, 923
FriOI GRGCYC 4 cut(s) 82, 196, 219, 465
Fsp4HI GCNGC 3 cut(s) 37, 237, 394
FspBI CTAG 1 cut(s) 617
GlaI GCGC 2 cut(s) 335, 833
GluI GCNGC 3 cut(s) 37, 237, 394
GsuI CTGGAG 2 cut(s) 734, 875
HaeIII GGCC 2 cut(s) 428, 632
HapII CCGG 2 cut(s) 221, 908
HgaI GACGC 1 cut(s) 298
HhaI GCGC 2 cut(s) 336, 834
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 7 cut(s) 189, 331, 377, 611, 692, 710, 1009
Hin6I GCGC 2 cut(s) 334, 832
HinP1I GCGC 2 cut(s) 334, 832
HincII GTYRAC 2 cut(s) 19, 343
HindII GTYRAC 2 cut(s) 19, 343
HinfI GANTC 3 cut(s) 443, 818, 914
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 2 cut(s) 221, 908
HphI GGTGA 2 cut(s) 156, 1037
Hpy166II GTNNAC 3 cut(s) 19, 343, 506
Hpy188I TCNGA 6 cut(s) 203, 257, 285, 411, 500, 964
Hpy8I GTNNAC 3 cut(s) 19, 343, 506
Hpy99I CGWCG 2 cut(s) 344, 356
HpyAV CCTTC 3 cut(s) 177, 280, 457
HpyCH4III ACNGT 4 cut(s) 570, 668, 680, 946
HpyCH4IV ACGT 2 cut(s) 228, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 829
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 2 cut(s) 228, 299
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 7 cut(s) 189, 331, 377, 611, 692, 710, 1009
HspAI GCGC 2 cut(s) 334, 832
Kpn2I TCCGGA 1 cut(s) 907
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 6 cut(s) 198, 240, 358, 406, 826, 959
LmnI GCTCC 6 cut(s) 191, 214, 222, 257, 411, 468
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 3 cut(s) 345, 928, 1006
MaeI CTAG 1 cut(s) 617
MaeII ACGT 2 cut(s) 228, 299
MaeIII GTNAC 4 cut(s) 8, 229, 698, 839
MalI GATC 6 cut(s) 200, 242, 360, 408, 828, 961
MbiI CCGCTC 1 cut(s) 601
MboI GATC 6 cut(s) 198, 240, 358, 406, 826, 959
MboII GAAGA 3 cut(s) 397, 546, 1024
MhlI GDGCHC 4 cut(s) 82, 196, 219, 465
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 7 cut(s) 97, 422, 585, 736, 862, 888, 986
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 552
Mox20I TGGCCA 1 cut(s) 428
Mph1103I ATGCAT 1 cut(s) 735
MroI TCCGGA 1 cut(s) 907
MroXI GAANNNNTTC 1 cut(s) 1046
MscI TGGCCA 1 cut(s) 428
MseI TTAA 4 cut(s) 18, 30, 849, 891
Msp20I TGGCCA 1 cut(s) 428
MspI CCGG 2 cut(s) 221, 908
MspR9I CCNGG 2 cut(s) 221, 1039
MvaI CCWGG 1 cut(s) 1039
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 829
NciI CCSGG 1 cut(s) 221
NdeII GATC 6 cut(s) 198, 240, 358, 406, 826, 959
NlaIII CATG 7 cut(s) 189, 331, 377, 611, 692, 710, 1009
NlaIV GGNNCC 4 cut(s) 193, 259, 321, 631
NmuCI GTSAC 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 735
NspI RCATGY 1 cut(s) 710
PaeI GCATGC 1 cut(s) 710
PaeR7I CTCGAG 2 cut(s) 272, 950
PagI TCATGA 1 cut(s) 373
PcsI WCGNNNNNNNCGW 4 cut(s) 261, 270, 348, 514
PdmI GAANNNNTTC 1 cut(s) 1046
PfeI GAWTC 2 cut(s) 443, 914
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 3 cut(s) 38, 238, 395
PleI GAGTC 1 cut(s) 826
PpsI GAGTC 1 cut(s) 826
PpuMI RGGWCCY 1 cut(s) 319
Psp124BI GAGCTC 3 cut(s) 82, 219, 465
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 1037
PspGI CCWGG 1 cut(s) 1037
PspN4I GGNNCC 4 cut(s) 193, 259, 321, 631
PspPI GGNCC 2 cut(s) 319, 630
PspPPI RGGWCCY 1 cut(s) 319
PstNI CAGNNNCTG 2 cut(s) 312, 977
RsaI GTAC 4 cut(s) 305, 473, 677, 956
RsaNI GTAC 4 cut(s) 304, 472, 676, 955
SacI GAGCTC 3 cut(s) 82, 219, 465
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 4 cut(s) 18, 30, 849, 891
SatI GCNGC 3 cut(s) 37, 237, 394
Sau3AI GATC 6 cut(s) 198, 240, 358, 406, 826, 959
Sau96I GGNCC 2 cut(s) 319, 630
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 2 cut(s) 221, 1039
SduI GDGCHC 4 cut(s) 82, 196, 219, 465
SfaNI GCATC 3 cut(s) 345, 928, 1006
Sfr274I CTCGAG 2 cut(s) 272, 950
SinI GGWCC 1 cut(s) 319
SlaI CTCGAG 2 cut(s) 272, 950
SmlI CTYRAG 4 cut(s) 272, 467, 815, 950
SmoI CTYRAG 4 cut(s) 272, 467, 815, 950
SphI GCATGC 1 cut(s) 710
Sse9I AATT 7 cut(s) 97, 422, 585, 736, 862, 888, 986
SsiI CCGC 5 cut(s) 189, 236, 349, 394, 599
SspI AATATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 617
SstI GAGCTC 3 cut(s) 82, 219, 465
StyD4I CCNGG 2 cut(s) 219, 1037
TaaI ACNGT 4 cut(s) 570, 668, 680, 946
TaiI ACGT 2 cut(s) 231, 302
TaqI TCGA 7 cut(s) 264, 273, 342, 441, 670, 951, 984
TasI AATT 7 cut(s) 97, 422, 585, 736, 862, 888, 986
TatI WGTACW 1 cut(s) 471
TauI GCSGC 2 cut(s) 239, 396
TfiI GAWTC 2 cut(s) 443, 914
Tru1I TTAA 4 cut(s) 18, 30, 849, 891
Tru9I TTAA 4 cut(s) 18, 30, 849, 891
TscAI CASTG 5 cut(s) 484, 555, 573, 660, 842
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 4 cut(s) 159, 362, 624, 994
TspGWI ACGGA 2 cut(s) 227, 972
TspRI CASTG 5 cut(s) 484, 555, 573, 660, 842
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 4 cut(s) 97, 585, 862, 986
XbaI TCTAGA 1 cut(s) 616
XceI RCATGY 1 cut(s) 710
XhoI CTCGAG 2 cut(s) 272, 950
XmiI GTMKAC 2 cut(s) 342, 505
XmnI GAANNNNTTC 1 cut(s) 1046
XspI CTAG 1 cut(s) 617
ZraI GACGTC 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.