Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018607

Physical Location & Seq

Genomic Coordinates Reverse (-)

27337261 .. 27339740

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGAAATTTAAGGAGATTGAGCCTCTGCAGAAGGATCTCAAAAAGCTCCGCACTGCAGATCATGCTGGTCGCAATGGTGGTTTGTGCTCATCTGAGGAAGAGCTTGATGCTCGGGTATATCAAAGGCTTGCAGTATATCATACAACATGAGAGCATTCCGTTGTCTGAGGAGAAGAAAATCCTTAAAGAGATCAAACAACTTGAAAACACACGTGGAGAAGTCATTGCTAATGCTGCTGTACGAGCCAAGATTCAGGAATCAGTGGTTCATATGGACAAAGAGGCCCTTCAAGACCTGGTTAAACTTATAGGTGGTGATTTGGATGGAGGAAGGAAAGAGCAACAAGCAGTTCGGTCCAAAATTCAGCAACTTGATGATGGAATTAAGGCCGTAGATAAGCAAATTTCATCAATATGGGATGAGCTGAAGATTGTAACTGATAAGAGGGATCAAGCACAACAGAGCAGTTTTACATTTAGGCAGCAGCTTGATCAGCAAGTAAAACGCCTCCTTTTACCTAAGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

20.1

Weight (kDa)

9.75

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018607)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0033481
rosa_laevigata	RLG00000017342
rosa_roxburghii	Rroxscaffold_155G00443940 Rroxscaffold_2G00080350 Rroxscaffold_3G00273660 Rroxscaffold_6G00414580
rosa_rugosa	Rorug02G0116500
rosa_samantha	Rh1BG044100 Rh3AG127300 Rh3BG148700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	44, 459
AcsI	RAATTY	3 cut(s)	7, 363, 405
AcuI	CTGAAG	1 cut(s)	449
AcvI	CACGTG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	206, 293
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	4 cut(s)	48, 105, 427, 490
AluI	AGCT	4 cut(s)	48, 105, 427, 490
Alw21I	GWGCWC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	44, 459
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	285, 390
ApeKI	GCWGC	3 cut(s)	236, 484, 487
ApoI	RAATTY	3 cut(s)	7, 363, 405
AspS9I	GGNCC	2 cut(s)	286, 357
AsuHPI	GGTGA	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	3 cut(s)	223, 496, 499
BccI	CCATC	2 cut(s)	320, 374
BceAI	ACGGC	2 cut(s)	377, 511
BciT130I	CCWGG	1 cut(s)	299
BclI	TGATCA	1 cut(s)	493
BfmI	CTRYAG	2 cut(s)	28, 56
BisI	GCNGC	3 cut(s)	237, 485, 488
BlsI	GCNGC	3 cut(s)	238, 486, 489
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	286, 357
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	522
BsaAI	YACGTR	1 cut(s)	215
Bse3DI	GCAATG	2 cut(s)	81, 225
BseBI	CCWGG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	331, 427
BseMI	GCAATG	2 cut(s)	81, 225
BseMII	CTCAG	2 cut(s)	86, 159
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	223, 496, 499
BshFI	GGCC	2 cut(s)	287, 392
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	287, 392
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	5 cut(s)	36, 60, 192, 451, 493
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	287, 392
BspCNI	CTCAG	2 cut(s)	87, 160
BspMAI	CTGCAG	2 cut(s)	32, 60
BspPI	GGATC	2 cut(s)	44, 459
BspQI	GCTCTTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	81, 225
BssMI	GATC	5 cut(s)	36, 60, 192, 451, 493
Bst2UI	CCWGG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	95, 168, 522
BstF5I	GGATG	2 cut(s)	331, 427
BstKTI	GATC	5 cut(s)	39, 63, 195, 454, 496
BstMBI	GATC	5 cut(s)	36, 60, 192, 451, 493
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 236, 245, 496
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	2 cut(s)	28, 56
BstV1I	GCAGC	3 cut(s)	223, 496, 499
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	287, 392
BtsCI	GGATG	2 cut(s)	331, 427
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	53, 270
Cac8I	GCNNGC	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	286, 357
CsiI	ACCWGGT	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	2 cut(s)	64, 149
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	95, 168, 522
DpnI	GATC	5 cut(s)	38, 62, 194, 453, 495
DpnII	GATC	5 cut(s)	36, 60, 192, 451, 493
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	449
Eco72I	CACGTG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	67, 152
FaiI	YATR	9 cut(s)	65, 120, 138, 143, 150, 273, 275, 311, 418
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	2 cut(s)	63, 148
FauNDI	CATATG	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	237, 485, 488
FokI	GGATG	2 cut(s)	338, 434
Fsp4HI	GCNGC	3 cut(s)	237, 485, 488
GluI	GCNGC	3 cut(s)	237, 485, 488
HaeIII	GGCC	2 cut(s)	287, 392
Hin1II	CATG	2 cut(s)	67, 152
HinfI	GANTC	2 cut(s)	253, 260
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	96, 169
Hpy188III	TCNNGA	2 cut(s)	257, 293
HpyAV	CCTTC	3 cut(s)	27, 299, 327
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	30, 58, 133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 236, 245, 496
HpyF3I	CTNAG	3 cut(s)	95, 168, 522
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	67, 152
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	5 cut(s)	36, 60, 192, 451, 493
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	4 cut(s)	53, 242, 284, 311
Lsp1109I	GCAGC	3 cut(s)	223, 496, 499
LweI	GCATC	1 cut(s)	99
MabI	ACCWGGT	1 cut(s)	297
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	5 cut(s)	38, 62, 194, 453, 495
MboI	GATC	5 cut(s)	36, 60, 192, 451, 493
MboII	GAAGA	3 cut(s)	112, 187, 442
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	4 cut(s)	7, 363, 384, 405
MnlI	CCTC	7 cut(s)	35, 90, 163, 277, 323, 441, 521
MseI	TTAA	4 cut(s)	11, 186, 303, 387
MslI	CAYNNNNRTG	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	4 cut(s)	64, 236, 245, 496
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	5 cut(s)	36, 60, 192, 451, 493
NlaIII	CATG	2 cut(s)	67, 152
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	253, 260
PkrI	GCNGC	3 cut(s)	238, 486, 489
PmaCI	CACGTG	1 cut(s)	215
PmlI	CACGTG	1 cut(s)	215
Ppu21I	YACGTR	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	297
PspCI	CACGTG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	297
PspPI	GGNCC	2 cut(s)	286, 357
PstI	CTGCAG	2 cut(s)	32, 60
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	415
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	4 cut(s)	11, 186, 303, 387
SatI	GCNGC	3 cut(s)	237, 485, 488
Sau3AI	GATC	5 cut(s)	36, 60, 192, 451, 493
Sau96I	GGNCC	2 cut(s)	286, 357
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	8 cut(s)	50, 107, 217, 300, 316, 429, 492, 523
SexAI	ACCWGGT	1 cut(s)	297
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	2 cut(s)	28, 56
SinI	GGWCC	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	415
Sse9I	AATT	4 cut(s)	7, 363, 384, 405
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	297
TaiI	ACGT	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	4 cut(s)	7, 363, 384, 405
TfiI	GAWTC	2 cut(s)	253, 260
Tru1I	TTAA	4 cut(s)	11, 186, 303, 387
Tru9I	TTAA	4 cut(s)	11, 186, 303, 387
TscAI	CASTG	2 cut(s)	60, 270
TseI	GCWGC	3 cut(s)	236, 484, 487
TspDTI	ATGAA	2 cut(s)	260, 399
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	60, 270
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	3 cut(s)	7, 363, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.