Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018607

Physical Location & Seq

Genomic Coordinates Forward (+)

15520030 .. 15522826

Gene Structure 2797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACTGGTGTAGGTAGTGCTATTTTATATAAATCAAGAAATCAAGCACAGATTACTGATGTTACATCCAATAATTACATTTTTCTCTATTGGAGGAAGTCTGAAAGCCAAGATTGGGAAGCTATTGCTTGCTGTTGTCGGGGAGCTCTTATTGTTTGCAGTTTGAGTTCTGGCACCTCTGCGTTTGAGCTTGATGCTGGGATCATCAACATGAGAGCATTCCGTTTGGTTCATATAGAAAAAGAGGCCCTTCAAGACCATGTTAAACATATAGGTGGTGATTCGGATGCAGTAAGGAAAGAGCAACGACCGGTCAGCAGAGGATTTTTTACATTTAGGCAGCAGCTTGATCAGCAAATAAAGAGTCTGGGAGCTAAAGCTGGAGTGGTCCTAAAACCTGGTAGCCCACTAAGTGCAATAGAGTATGTCCTCAATGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004750 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016853 GO:0016854 GO:0016857 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00030 ko00040 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00040 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Ribul_P_3_epim

Protein Analysis

148

Amino Acids

16.3

Weight (kDa)

8.72

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018607)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0033481
rosa_laevigata	RLG00000017342
rosa_roxburghii	Rroxscaffold_155G00443940 Rroxscaffold_2G00080350 Rroxscaffold_3G00273660 Rroxscaffold_6G00414580
rosa_rugosa	Rorug02G0116500
rosa_samantha	Rh1BG044100 Rh3AG127300 Rh3BG148700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgeI	ACCGGT	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	6 cut(s)	122, 146, 190, 346, 374, 380
AluI	AGCT	6 cut(s)	122, 146, 190, 346, 374, 380
Alw21I	GWGCWC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	340, 343
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AsiGI	ACCGGT	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	247, 388
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	352, 355
BciT130I	CCWGG	1 cut(s)	399
BclI	TGATCA	1 cut(s)	349
BisI	GCNGC	2 cut(s)	341, 344
BlsI	GCNGC	2 cut(s)	342, 345
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	247, 388
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	184, 277
BpmI	CTGGAG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	65, 292
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	352, 355
BseYI	CCCAGC	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	173
BshTI	ACCGGT	1 cut(s)	310
BsiEI	CGRYCG	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	201, 349
BspANI	GGCC	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	310
BssMI	GATC	2 cut(s)	201, 349
Bst2UI	CCWGG	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	65, 292
BstKTI	GATC	2 cut(s)	204, 352
BstMBI	GATC	2 cut(s)	201, 349
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstV1I	GCAGC	2 cut(s)	352, 355
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	65, 292
Cac8I	GCNNGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	247, 388
CsiI	ACCWGGT	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	310
CviAII	CATG	2 cut(s)	211, 260
CviJI	RGCY	9 cut(s)	108, 122, 146, 190, 248, 346, 374, 380, 405
CviKI_1	RGCY	9 cut(s)	108, 122, 146, 190, 248, 346, 374, 380, 405
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	2 cut(s)	203, 351
DpnII	GATC	2 cut(s)	201, 349
DraIII	CACNNNGTG	1 cut(s)	413
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	2 cut(s)	214, 263
FaiI	YATR	9 cut(s)	28, 30, 212, 234, 236, 261, 270, 272, 426
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	2 cut(s)	210, 259
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	341, 344
FokI	GGATG	2 cut(s)	52, 299
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	341, 344
GluI	GCNGC	2 cut(s)	341, 344
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	311
Hin1II	CATG	2 cut(s)	214, 263
HinfI	GANTC	2 cut(s)	281, 364
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	103, 286
Hpy188III	TCNNGA	2 cut(s)	36, 254
HpyAV	CCTTC	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	159, 290, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	1 cut(s)	410
Hsp92II	CATG	2 cut(s)	214, 263
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	201, 349
LmnI	GCTCC	2 cut(s)	143, 371
LpnPI	CCDG	7 cut(s)	156, 183, 324, 353, 366, 384, 411
Lsp1109I	GCAGC	2 cut(s)	352, 355
LweI	GCATC	2 cut(s)	184, 277
MabI	ACCWGGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	203, 351
MboI	GATC	2 cut(s)	201, 349
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	5 cut(s)	87, 187, 238, 314, 440
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	209, 273
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	2 cut(s)	201, 349
NlaIII	CATG	2 cut(s)	214, 263
NlaIV	GGNNCC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	281
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	342, 345
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	2 cut(s)	247, 388
RseI	CAYNNNNRTG	2 cut(s)	209, 273
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	341, 344
Sau3AI	GATC	2 cut(s)	201, 349
Sau96I	GGNCC	2 cut(s)	247, 388
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	148
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	2 cut(s)	184, 277
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	209, 273
Sse9I	AATT	1 cut(s)	73
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	397
TasI	AATT	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseI	GCWGC	2 cut(s)	340, 343
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.