Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018607

Physical Location & Seq

Genomic Coordinates Reverse (-)

65375723 .. 65380083

Gene Structure 4361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGCAGCTTGGAAGGAAAAGCACCCTACCAGGCCAAGGCAGAGAAGAGGAAGGTTGAATACAACAAGAATGTGGATGTTTATAACAAGAAACAACTTATAGGTGGTGATTTGGATGGAGTAAGGAAAGATCAACAAGCAGTTAGGTCCAAAATTCAGCAACTTGATGATGCAGTTAAGGTTGTAGATCAGCAAATTTCATCAATATGGGATGAGCTGAAAACTGTAACTGATAAGAGGGATCAAGCACAACAGAGCATTTTTACCTTTAGGAGCAGCTTGATTAGCAACTTCAGAATAACCGCCGTTATAGAAGATGCATTTAATGAGAGCACCGCTATCATAATGGGAAAACAAGTTGAAGAGCTCTTTGAAACCACAAGCGAGGATCTCATCCTCATTAAAGACCCAAAAACGCTGTCACTAGAAATCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.42

Weight (kDa)

5.11

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018607)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0033481
rosa_laevigata	RLG00000017342
rosa_roxburghii	Rroxscaffold_155G00443940 Rroxscaffold_2G00080350 Rroxscaffold_3G00273660 Rroxscaffold_6G00414580
rosa_rugosa	Rorug02G0116500
rosa_samantha	Rh1BG044100 Rh3AG127300 Rh3BG148700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AciI	CCGC	2 cut(s)	303, 336
AclWI	GGATC	2 cut(s)	249, 396
AcsI	RAATTY	2 cut(s)	153, 195
AcuI	CTGAAG	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	59, 362, 374
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	4 cut(s)	9, 217, 279, 367
AluI	AGCT	4 cut(s)	9, 217, 279, 367
Alw21I	GWGCWC	2 cut(s)	335, 369
AlwI	GGATC	2 cut(s)	249, 396
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	6, 276
ApoI	RAATTY	2 cut(s)	153, 195
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
Bbv12I	GWGCWC	2 cut(s)	335, 369
BbvI	GCAGC	2 cut(s)	18, 288
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	425
BisI	GCNGC	2 cut(s)	7, 277
BlsI	GCNGC	2 cut(s)	8, 278
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	160, 307
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	4 cut(s)	82, 121, 217, 393
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	18, 288
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	335, 369
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	335, 369
Bsp143I	GATC	4 cut(s)	130, 187, 241, 388
BspACI	CCGC	2 cut(s)	303, 336
BspANI	GGCC	1 cut(s)	35
BspPI	GGATC	2 cut(s)	249, 396
BspQI	GCTCTTC	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	4 cut(s)	130, 187, 241, 388
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	2 cut(s)	41, 357
BstF5I	GGATG	4 cut(s)	82, 121, 217, 393
BstKTI	GATC	4 cut(s)	133, 190, 244, 391
BstMBI	GATC	4 cut(s)	130, 187, 241, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	18, 288
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	4 cut(s)	82, 121, 217, 393
Cfr13I	GGNCC	1 cut(s)	147
CviJI	RGCY	5 cut(s)	9, 35, 217, 279, 367
CviKI_1	RGCY	5 cut(s)	9, 35, 217, 279, 367
DpnI	GATC	4 cut(s)	132, 189, 243, 390
DpnII	GATC	4 cut(s)	130, 187, 241, 388
Eam1104I	CTCTTC	2 cut(s)	41, 357
EarI	CTCTTC	2 cut(s)	41, 357
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	36
FaiI	YATR	5 cut(s)	84, 101, 208, 311, 344
Fnu4HI	GCNGC	2 cut(s)	7, 277
FokI	GGATG	4 cut(s)	89, 128, 224, 380
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	7, 277
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	7, 277
HaeIII	GGCC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	8, 46
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	173, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	130, 187, 241, 388
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	2 cut(s)	17, 44
Lsp1109I	GCAGC	2 cut(s)	18, 288
LweI	GCATC	2 cut(s)	160, 307
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	226, 420
MalI	GATC	4 cut(s)	132, 189, 243, 390
MboI	GATC	4 cut(s)	130, 187, 241, 388
MboII	GAAGA	3 cut(s)	58, 326, 374
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	335, 369
MluCI	AATT	2 cut(s)	153, 195
MnlI	CCTC	4 cut(s)	42, 231, 379, 407
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	3 cut(s)	177, 324, 402
MslI	CAYNNNNRTG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeII	GATC	4 cut(s)	130, 187, 241, 388
NmuCI	GTSAC	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	8, 278
PsiI	TTATAA	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	177, 324, 402
SatI	GCNGC	2 cut(s)	7, 277
Sau3AI	GATC	4 cut(s)	130, 187, 241, 388
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	335, 369
SetI	ASST	9 cut(s)	11, 57, 106, 149, 183, 219, 269, 281, 369
SfaNI	GCATC	2 cut(s)	160, 307
SinI	GGWCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	205
Sse9I	AATT	2 cut(s)	153, 195
SsiI	CCGC	2 cut(s)	303, 336
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	226
TasI	AATT	2 cut(s)	153, 195
Tru1I	TTAA	3 cut(s)	177, 324, 402
Tru9I	TTAA	3 cut(s)	177, 324, 402
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	2 cut(s)	6, 276
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	2 cut(s)	153, 195
XspI	CTAG	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.