RchiOBHm_Chr5g0055841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019943
Physical Location & Seq
Reverse (-)
59201214 .. 59202570
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33278

Sequence Viewer

Length: 573 bp
ATGGACGCTGTCGTCGGACGGACCTTGCTGCTGGGTGATCGTGGTCCCTTGTATCGGGGTGGCTTTGCTCTTGATCGTTGGGATCGATGGCAGGTGGTAGGGGAGATAAGAGTTGTTGGGTGGTGGTGGTTCAGTACTTGCAGGTGGACGTTGTGGGTTGGTTGGGCGGCATGTCTGGGGAAGAAGAGGGCAGGGGAGATGGGATTTGTGGCGGGTCGAATCCTGGATGGTCAGATATGGTGGTGGATTGTCGATCCATTCTGGGTTGGCGCTACGAGTCCTCGACTCGATCAGGGTTGGGTGGACTTCTGGATTGGGGTGTGGGCTGTGGATCTCTGGCGGTGGCGTGATTGGGTTGGTGGGTTGCCGACGATGGTGCGAGATAACCGATTTTGGGGTGCGCTGATGGTGGAGGTCCGTCGCAAGTGGTGGCATGTCAGGAATACGGGGACGAAGGTGGGGGTTGTGCAAGAACTGGGCTGGGCCTGTTTGGTAGATCTGATTTCTCTGCTATTTTGTCTGGAGGTGGGGTTTGGGCTCAATTTTGGGCCCTGTCCTGGTTGTTTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

22.05

Weight (kDa)

8.89

Isoelectric Point (pI)

29.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019943)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0055841
rosa_multiflora Rmu_sc0012347.1_g000001 Rmu_sc0013558.1_g000002
rosa_roxburghii Rroxscaffold_1G00047060 Rroxscaffold_1G00058830 Rroxscaffold_1G00074050
rosa_rugosa Rorug07G0177100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 82, 132
AasI GACNNNNNNGTC 1 cut(s) 11
Acc36I ACCTGC 2 cut(s) 82, 132
AciI CCGC 3 cut(s) 167, 212, 340
AclWI GGATC 3 cut(s) 90, 248, 339
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 54, 394, 557
AjnI CCWGG 2 cut(s) 222, 556
AlwI GGATC 3 cut(s) 90, 248, 339
AoxI GGCC 2 cut(s) 483, 548
ApaI GGGCCC 1 cut(s) 552
ApeKI GCWGC 1 cut(s) 28
AspLEI GCGC 2 cut(s) 272, 403
AspS9I GGNCC 6 cut(s) 21, 44, 415, 483, 548, 549
AsuHPI GGTGA 1 cut(s) 47
AvaII GGWCC 3 cut(s) 21, 44, 415
BaeGI GKGCMC 1 cut(s) 552
BanII GRGCYC 2 cut(s) 540, 552
BbvI GCAGC 1 cut(s) 15
BccI CCATC 5 cut(s) 81, 193, 221, 367, 400
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 2 cut(s) 224, 558
BfoI RGCGCY 1 cut(s) 273
BfuAI ACCTGC 2 cut(s) 82, 132
BglII AGATCT 1 cut(s) 496
BisI GCNGC 2 cut(s) 29, 168
BlsI GCNGC 2 cut(s) 30, 169
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 224, 558
Bme18I GGWCC 3 cut(s) 21, 44, 415
BmgT120I GGNCC 6 cut(s) 21, 44, 415, 483, 548, 549
BmiI GGNNCC 2 cut(s) 46, 550
BmrFI CCNGG 2 cut(s) 224, 558
BmrI ACTGGG 1 cut(s) 485
BmuI ACTGGG 1 cut(s) 485
BpmI CTGGAG 1 cut(s) 542
Bsa29I ATCGAT 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 394, 557
Bse1I ACTGG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 224, 558
BseCI ATCGAT 1 cut(s) 85
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 3 cut(s) 54, 394, 557
BseNI ACTGG 1 cut(s) 480
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 1 cut(s) 15
BseYI CCCAGC 2 cut(s) 31, 480
BshFI GGCC 2 cut(s) 485, 550
BshVI ATCGAT 1 cut(s) 85
BslFI GGGAC 2 cut(s) 30, 463
BslI CCNNNNNNNGG 3 cut(s) 54, 394, 557
BsmFI GGGAC 2 cut(s) 30, 463
BsnI GGCC 2 cut(s) 485, 550
Bsp120I GGGCCC 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 540, 552
Bsp143I GATC 7 cut(s) 37, 73, 82, 253, 289, 331, 496
BspACI CCGC 3 cut(s) 167, 212, 340
BspANI GGCC 2 cut(s) 485, 550
BspDI ATCGAT 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 46, 550
BspMI ACCTGC 2 cut(s) 82, 132
BspPI GGATC 3 cut(s) 90, 248, 339
BsrI ACTGG 1 cut(s) 480
BssMI GATC 7 cut(s) 37, 73, 82, 253, 289, 331, 496
Bst2UI CCWGG 2 cut(s) 224, 558
Bst6I CTCTTC 1 cut(s) 179
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 2 cut(s) 272, 403
BstKTI GATC 7 cut(s) 40, 76, 85, 256, 292, 334, 499
BstMBI GATC 7 cut(s) 37, 73, 82, 253, 289, 331, 496
BstNI CCWGG 2 cut(s) 224, 558
BstNSI RCATGY 2 cut(s) 174, 437
BstSCI CCNGG 2 cut(s) 222, 556
BstSLI GKGCMC 1 cut(s) 552
BstV1I GCAGC 1 cut(s) 15
BstX2I RGATCY 2 cut(s) 331, 496
BstYI RGATCY 2 cut(s) 331, 496
Bsu15I ATCGAT 1 cut(s) 85
BsuRI GGCC 2 cut(s) 485, 550
BsuTUI ATCGAT 1 cut(s) 85
BtsCI GGATG 1 cut(s) 232
BveI ACCTGC 2 cut(s) 82, 132
CfoI GCGC 2 cut(s) 272, 403
Cfr13I GGNCC 6 cut(s) 21, 44, 415, 483, 548, 549
ClaI ATCGAT 1 cut(s) 85
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 135
CviAII CATG 2 cut(s) 171, 434
CviJI RGCY 6 cut(s) 63, 326, 480, 485, 538, 550
CviKI_1 RGCY 6 cut(s) 63, 326, 480, 485, 538, 550
CviQI GTAC 1 cut(s) 135
DpnI GATC 7 cut(s) 39, 75, 84, 255, 291, 333, 498
DpnII GATC 7 cut(s) 37, 73, 82, 253, 289, 331, 496
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco24I GRGCYC 2 cut(s) 540, 552
Eco47I GGWCC 3 cut(s) 21, 44, 415
EcoO109I RGGNCCY 1 cut(s) 549
EcoRII CCWGG 2 cut(s) 222, 556
EcoT38I GRGCYC 2 cut(s) 540, 552
FaeI CATG 2 cut(s) 174, 437
FaiI YATR 3 cut(s) 172, 238, 435
FaqI GGGAC 2 cut(s) 30, 463
FatI CATG 2 cut(s) 170, 433
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 29, 168
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 2 cut(s) 540, 552
Fsp4HI GCNGC 2 cut(s) 29, 168
GlaI GCGC 2 cut(s) 271, 402
GluI GCNGC 2 cut(s) 29, 168
GsaI CCCAGC 2 cut(s) 35, 484
GsuI CTGGAG 1 cut(s) 542
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 2 cut(s) 485, 550
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 272, 403
Hin1II CATG 2 cut(s) 174, 437
Hin6I GCGC 2 cut(s) 270, 401
HinP1I GCGC 2 cut(s) 270, 401
HinfI GANTC 3 cut(s) 219, 277, 285
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 147, 304
Hpy188I TCNGA 3 cut(s) 17, 234, 501
Hpy188III TCNNGA 4 cut(s) 71, 310, 439, 521
Hpy8I GTNNAC 2 cut(s) 147, 304
Hpy99I CGWCG 3 cut(s) 17, 373, 423
HpyAV CCTTC 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 141, 469
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 174, 437
HspAI GCGC 2 cut(s) 270, 401
Kzo9I GATC 7 cut(s) 37, 73, 82, 253, 289, 331, 496
Lsp1109I GCAGC 1 cut(s) 15
MaeII ACGT 1 cut(s) 149
MalI GATC 7 cut(s) 39, 75, 84, 255, 291, 333, 498
MboI GATC 7 cut(s) 37, 73, 82, 253, 289, 331, 496
MboII GAAGA 2 cut(s) 193, 196
MflI RGATCY 2 cut(s) 331, 496
MhlI GDGCHC 2 cut(s) 540, 552
MluCI AATT 1 cut(s) 541
MlyI GAGTC 2 cut(s) 279, 286
MnlI CCTC 4 cut(s) 180, 291, 406, 517
MseI TTAA 1 cut(s) 571
MspR9I CCNGG 2 cut(s) 224, 558
MvaI CCWGG 2 cut(s) 224, 558
NdeII GATC 7 cut(s) 37, 73, 82, 253, 289, 331, 496
NlaIII CATG 2 cut(s) 174, 437
NlaIV GGNNCC 2 cut(s) 46, 550
NspI RCATGY 2 cut(s) 174, 437
PaqCI CACCTGC 2 cut(s) 82, 132
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PfeI GAWTC 1 cut(s) 219
PflFI GACNNNGTC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 2 cut(s) 30, 169
PleI GAGTC 2 cut(s) 279, 285
PpsI GAGTC 2 cut(s) 279, 285
Psp6I CCWGG 2 cut(s) 222, 556
PspFI CCCAGC 2 cut(s) 31, 480
PspGI CCWGG 2 cut(s) 222, 556
PspN4I GGNNCC 2 cut(s) 46, 550
PspOMI GGGCCC 1 cut(s) 548
PspPI GGNCC 6 cut(s) 21, 44, 415, 483, 548, 549
PsuI RGATCY 2 cut(s) 331, 496
PsyI GACNNNGTC 1 cut(s) 8
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 571
SatI GCNGC 2 cut(s) 29, 168
Sau3AI GATC 7 cut(s) 37, 73, 82, 253, 289, 331, 496
Sau96I GGNCC 6 cut(s) 21, 44, 415, 483, 548, 549
ScaI AGTACT 1 cut(s) 136
SchI GAGTC 2 cut(s) 279, 286
ScrFI CCNGG 2 cut(s) 224, 558
SduI GDGCHC 2 cut(s) 540, 552
SetI ASST 7 cut(s) 26, 96, 146, 152, 417, 459, 528
SinI GGWCC 3 cut(s) 21, 44, 415
Sse9I AATT 1 cut(s) 541
SsiI CCGC 3 cut(s) 167, 212, 340
StyD4I CCNGG 2 cut(s) 222, 556
TaiI ACGT 1 cut(s) 152
TaqI TCGA 5 cut(s) 85, 217, 252, 283, 288
TasI AATT 1 cut(s) 541
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 1 cut(s) 219
Tru1I TTAA 1 cut(s) 571
Tru9I TTAA 1 cut(s) 571
TseI GCWGC 1 cut(s) 28
TspGWI ACGGA 2 cut(s) 34, 407
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 3 cut(s) 21, 44, 415
XceI RCATGY 2 cut(s) 174, 437
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.