Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012347.1

Orthogroup ID

OG0019943

Physical Location & Seq

Genomic Coordinates Forward (+)

4835 .. 8163

Gene Structure 3329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012347.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgctcgaacttttggaggcctcaaacttagctttagaaggtgaaaacatcctagatgaggctaaagctttcttaatggtcactctcagagataccaataccatgtgtgatgatatagaccgttgcatttccaagcatgtggcctatgccttgaagctttcatcacaaaggagagtccagtggtggtggaacaatctgggtctcacaaagaacttggactttgcaagagatagaatggtggaatgtttcatgtgtgctatgggattagcttttgagtctcagtacaagtcttttagaaaatccctgactaaagttatcaatttgatacttatcatagatgccgtttatgatgtttatggctcgttggaagagctaaatcacttcaccaaacctgttgaaaggtgggatgttagggaaactgagcagcttccggagtgtatgaagatctgtttccaagtactctacaatactacttgtgaaattgcttatgaaattgaggaggagaaagaaaaggtccgacgaagcagcagaagaccagacgaagctgcaagaccagacgaagctgcaagaccagacgagcagcagaggaactccgagcagcaaccgaagaagactgggtctgggtctgagggattgtggaggttggatcagaggtggcgctcagcggtctggttgcacgaggatggtggatgcgagttaatccgccttggtttgggaatgggagtttttccagatccgattggggtatggtggctggtagatcagcgtcttggaacagttgggttggaggagcggtgggttgggtccgttgtaggcgggcctgatctgtctcaggcggtggtgacccggtgtaggtggcggcggcccaatgcttctgcttgttcagaattgggctctaactatggctgtgatatccttgcctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

308

Amino Acids

35.32

Weight (kDa)

5.14

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019943)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0055841
rosa_multiflora	Rmu_sc0012347.1_g000001 Rmu_sc0013558.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047060 Rroxscaffold_1G00058830 Rroxscaffold_1G00074050
rosa_rugosa	Rorug07G0177100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	793
AccIII	TCCGGA	1 cut(s)	430
AciI	CCGC	7 cut(s)	665, 703, 793, 816, 836, 859, 862
AclWI	GGATC	2 cut(s)	654, 728
AfaI	GTAC	2 cut(s)	284, 459
AfiI	CCNNNNNNNGG	3 cut(s)	58, 712, 852
AgsI	TTSAA	2 cut(s)	154, 398
AluBI	AGCT	8 cut(s)	32, 68, 157, 269, 373, 427, 545, 563
AluI	AGCT	8 cut(s)	32, 68, 157, 269, 373, 427, 545, 563
Alw26I	GTCTC	3 cut(s)	206, 282, 834
AlwI	GGATC	2 cut(s)	654, 728
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	4 cut(s)	18, 141, 818, 863
ApeKI	GCWGC	6 cut(s)	424, 525, 545, 563, 580, 598
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	4 cut(s)	514, 804, 818, 864
AsuC2I	CCSGG	1 cut(s)	847
AsuHPI	GGTGA	3 cut(s)	53, 376, 853
AvaII	GGWCC	2 cut(s)	514, 804
BanII	GRGCYC	1 cut(s)	896
BauI	CACGAG	1 cut(s)	677
BbsI	GAAGAC	2 cut(s)	538, 617
BbvI	GCAGC	6 cut(s)	436, 532, 537, 550, 592, 610
BccI	CCATC	1 cut(s)	677
BceAI	ACGGC	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	3 cut(s)	206, 282, 834
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	661
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	8 cut(s)	425, 526, 546, 564, 581, 599, 860, 863
BlpI	GCTNAGC	1 cut(s)	661
BlsI	GCNGC	8 cut(s)	426, 527, 547, 565, 582, 600, 861, 864
BmcAI	AGTACT	1 cut(s)	459
Bme1390I	CCNGG	1 cut(s)	847
Bme18I	GGWCC	2 cut(s)	514, 804
BmgT120I	GGNCC	4 cut(s)	514, 804, 818, 864
BmiI	GGNNCC	1 cut(s)	805
BmrFI	CCNGG	1 cut(s)	847
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	2 cut(s)	328, 680
BmuI	ACTGGG	1 cut(s)	624
BpiI	GAAGAC	2 cut(s)	538, 617
Bpu1102I	GCTNAGC	1 cut(s)	661
BpuMI	CCSGG	1 cut(s)	847
BsaBI	GATNNNNATC	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	706
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 712, 852
Bse1I	ACTGG	2 cut(s)	178, 619
Bse8I	GATNNNNATC	1 cut(s)	329
BseAI	TCCGGA	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	706
BseGI	GGATG	4 cut(s)	48, 412, 688, 695
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	3 cut(s)	58, 712, 852
BseMII	CTCAG	6 cut(s)	100, 293, 411, 618, 675, 845
BseNI	ACTGG	2 cut(s)	178, 619
BseRI	GAGGAG	3 cut(s)	512, 515, 803
BseXI	GCAGC	6 cut(s)	436, 532, 537, 550, 592, 610
BshFI	GGCC	4 cut(s)	20, 143, 820, 865
BsiSI	CCGG	2 cut(s)	431, 847
BslI	CCNNNNNNNGG	3 cut(s)	58, 712, 852
BsmAI	GTCTC	3 cut(s)	206, 282, 834
BsnI	GGCC	4 cut(s)	20, 143, 820, 865
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	896
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	5 cut(s)	444, 646, 733, 760, 823
Bsp1720I	GCTNAGC	1 cut(s)	661
BspACI	CCGC	7 cut(s)	665, 703, 793, 816, 836, 859, 862
BspANI	GGCC	4 cut(s)	20, 143, 820, 865
BspCNI	CTCAG	6 cut(s)	99, 292, 412, 619, 674, 844
BspEI	TCCGGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	805
BspPI	GGATC	2 cut(s)	654, 728
BspQI	GCTCTTC	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	793
BsrI	ACTGG	2 cut(s)	178, 619
BssECI	CCNNGG	1 cut(s)	706
BssMI	GATC	5 cut(s)	444, 646, 733, 760, 823
BssSI	CACGAG	1 cut(s)	677
BssT1I	CCWWGG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	677
Bst4CI	ACNGT	2 cut(s)	122, 778
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	818
BstDEI	CTNAG	8 cut(s)	28, 86, 279, 420, 627, 661, 831, 924
BstEII	GGTNACC	1 cut(s)	841
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	4 cut(s)	48, 412, 688, 695
BstH2I	RGCGCY	1 cut(s)	661
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	5 cut(s)	447, 649, 736, 763, 826
BstMAI	GTCTC	3 cut(s)	206, 282, 834
BstMBI	GATC	5 cut(s)	444, 646, 733, 760, 823
BstNSI	RCATGY	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	841
BstSCI	CCNGG	1 cut(s)	845
BstV1I	GCAGC	6 cut(s)	436, 532, 537, 550, 592, 610
BstV2I	GAAGAC	2 cut(s)	538, 617
BstX2I	RGATCY	2 cut(s)	444, 733
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	2 cut(s)	444, 733
BsuRI	GGCC	4 cut(s)	20, 143, 820, 865
BtsCI	GGATG	4 cut(s)	48, 412, 688, 695
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	818
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	4 cut(s)	514, 804, 818, 864
CseI	GACGC	1 cut(s)	755
Csp6I	GTAC	2 cut(s)	283, 458
CviAII	CATG	3 cut(s)	103, 137, 250
CviQI	GTAC	2 cut(s)	283, 458
DdeI	CTNAG	8 cut(s)	28, 86, 279, 420, 627, 661, 831, 924
DpnI	GATC	5 cut(s)	446, 648, 735, 762, 825
DpnII	GATC	5 cut(s)	444, 646, 733, 760, 823
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	692
Eco130I	CCWWGG	1 cut(s)	706
Eco147I	AGGCCT	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	896
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	913
Eco47I	GGWCC	2 cut(s)	514, 804
Eco91I	GGTNACC	1 cut(s)	841
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	841
EcoRV	GATATC	1 cut(s)	913
EcoT14I	CCWWGG	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	896
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	3 cut(s)	106, 140, 253
FatI	CATG	3 cut(s)	102, 136, 249
FauI	CCCGC	1 cut(s)	809
Fnu4HI	GCNGC	8 cut(s)	425, 526, 546, 564, 581, 599, 860, 863
FokI	GGATG	4 cut(s)	35, 419, 695, 702
FriOI	GRGCYC	1 cut(s)	896
Fsp4HI	GCNGC	8 cut(s)	425, 526, 546, 564, 581, 599, 860, 863
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	8 cut(s)	425, 526, 546, 564, 581, 599, 860, 863
HaeII	RGCGCY	1 cut(s)	661
HaeIII	GGCC	4 cut(s)	20, 143, 820, 865
HapII	CCGG	2 cut(s)	431, 847
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	1 cut(s)	660
Hin1II	CATG	3 cut(s)	106, 140, 253
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HindIII	AAGCTT	2 cut(s)	66, 155
HinfI	GANTC	2 cut(s)	174, 275
HpaII	CCGG	2 cut(s)	431, 847
HphI	GGTGA	3 cut(s)	53, 376, 853
Hpy188I	TCNGA	7 cut(s)	89, 518, 595, 628, 651, 738, 886
Hpy188III	TCNNGA	2 cut(s)	431, 731
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	122, 778
HpyCH4V	TGCA	5 cut(s)	126, 224, 548, 566, 676
HpyF3I	CTNAG	8 cut(s)	28, 86, 279, 420, 627, 661, 831, 924
Hsp92II	CATG	3 cut(s)	106, 140, 253
HspAI	GCGC	1 cut(s)	658
Kpn2I	TCCGGA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	444, 646, 733, 760, 823
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	6 cut(s)	436, 532, 537, 550, 592, 610
LweI	GCATC	2 cut(s)	328, 680
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	79, 841
MalI	GATC	5 cut(s)	446, 648, 735, 762, 825
MbiI	CCGCTC	1 cut(s)	793
MboI	GATC	5 cut(s)	444, 646, 733, 760, 823
MboII	GAAGA	5 cut(s)	380, 454, 543, 619, 622
MflI	RGATCY	2 cut(s)	444, 733
MhlI	GDGCHC	1 cut(s)	896
MluCI	AATT	4 cut(s)	319, 480, 492, 887
MlyI	GAGTC	2 cut(s)	183, 284
MmeI	TCCRAC	4 cut(s)	345, 541, 624, 765
MroI	TCCGGA	1 cut(s)	430
MseI	TTAA	2 cut(s)	74, 698
MslI	CAYNNNNRTG	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	2 cut(s)	431, 847
MspR9I	CCNGG	1 cut(s)	847
NciI	CCSGG	1 cut(s)	847
NdeII	GATC	5 cut(s)	444, 646, 733, 760, 823
NlaIII	CATG	3 cut(s)	106, 140, 253
NlaIV	GGNNCC	1 cut(s)	805
NmuCI	GTSAC	2 cut(s)	79, 841
NspI	RCATGY	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	363
PflFI	GACNNNGTC	1 cut(s)	616
PkrI	GCNGC	8 cut(s)	426, 527, 547, 565, 582, 600, 861, 864
PleI	GAGTC	2 cut(s)	182, 283
PpsI	GAGTC	2 cut(s)	182, 283
PspEI	GGTNACC	1 cut(s)	841
PspN4I	GGNNCC	1 cut(s)	805
PspPI	GGNCC	4 cut(s)	514, 804, 818, 864
PsuI	RGATCY	2 cut(s)	444, 733
PsyI	GACNNNGTC	1 cut(s)	616
RsaI	GTAC	2 cut(s)	284, 459
RsaNI	GTAC	2 cut(s)	283, 458
RseI	CAYNNNNRTG	1 cut(s)	681
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	74, 698
SatI	GCNGC	8 cut(s)	425, 526, 546, 564, 581, 599, 860, 863
Sau3AI	GATC	5 cut(s)	444, 646, 733, 760, 823
Sau96I	GGNCC	4 cut(s)	514, 804, 818, 864
ScaI	AGTACT	1 cut(s)	459
SchI	GAGTC	2 cut(s)	183, 284
ScrFI	CCNGG	1 cut(s)	847
SduI	GDGCHC	1 cut(s)	896
SfaNI	GCATC	2 cut(s)	328, 680
SinI	GGWCC	2 cut(s)	514, 804
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	4 cut(s)	319, 480, 492, 887
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	7 cut(s)	665, 703, 793, 816, 836, 859, 862
SspMI	CTAG	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	845
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	2 cut(s)	122, 778
TaqI	TCGA	1 cut(s)	6
TasI	AATT	4 cut(s)	319, 480, 492, 887
TatI	WGTACW	2 cut(s)	282, 457
TauI	GCSGC	2 cut(s)	862, 865
Tru1I	TTAA	2 cut(s)	74, 698
Tru9I	TTAA	2 cut(s)	74, 698
TscAI	CASTG	1 cut(s)	185
TseFI	GTSAC	2 cut(s)	79, 841
TseI	GCWGC	6 cut(s)	424, 525, 545, 563, 580, 598
Tsp45I	GTSAC	2 cut(s)	79, 841
TspDTI	ATGAA	4 cut(s)	150, 238, 455, 504
TspGWI	ACGGA	1 cut(s)	796
TspRI	CASTG	1 cut(s)	185
Tth111I	GACNNNGTC	1 cut(s)	616
VpaK11BI	GGWCC	2 cut(s)	514, 804
XagI	CCTNNNNNAGG	1 cut(s)	56
XceI	RCATGY	1 cut(s)	140
XspI	CTAG	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.