Rroxscaffold_1G00047060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019943
Physical Location & Seq
Forward (+)
66556977 .. 66557300
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047060.1

Sequence Viewer

Length: 324 bp
ATGCTCGGTTCTTGCGGGACGAAGTGGCGGGTCGATGGATTGTGGAGGTCGGATCCGAGGTGGCGTTCTGCACGGTTACACGAGGATGGTGGATGCGAGTTGATCCGCCTTGGTTTGAGGATGGGAGTATTTCCATATCCGATCGGGGCATGGTGGCTAGTAGATCGGCGTCTTGGGACAACGGGTTTGGAGGAGTGGTGGCGGCAGCGATCTATTGCAGGTTCGATCCGATTGGGTGGATACTCCAAAGCCGGTAGAGGAACGTTGCAGGTGGTGGCTAGATGCGGTGGATGGGTCGATGCGGGCGGGCGCGATCGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.02

Weight (kDa)

10.69

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019943)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0055841
rosa_multiflora Rmu_sc0012347.1_g000001 Rmu_sc0013558.1_g000002
rosa_roxburghii Rroxscaffold_1G00047060 Rroxscaffold_1G00058830 Rroxscaffold_1G00074050
rosa_rugosa Rorug07G0177100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 2 cut(s) 209, 259
AccII CGCG 1 cut(s) 312
AciI CCGC 7 cut(s) 15, 28, 106, 202, 285, 302, 306
AclI AACGTT 1 cut(s) 263
AclWI GGATC 4 cut(s) 47, 60, 97, 220
AcyI GRCGYC 1 cut(s) 169
AlwI GGATC 4 cut(s) 47, 60, 97, 220
ApeKI GCWGC 1 cut(s) 205
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
AspLEI GCGC 1 cut(s) 312
BamHI GGATCC 1 cut(s) 52
BauI CACGAG 1 cut(s) 80
BbvI GCAGC 1 cut(s) 217
BccI CCATC 4 cut(s) 29, 80, 115, 285
BciVI GTATCC 1 cut(s) 233
BfaI CTAG 2 cut(s) 158, 279
BfuAI ACCTGC 2 cut(s) 209, 259
BfuI GTATCC 1 cut(s) 233
BisI GCNGC 2 cut(s) 203, 206
BlsI GCNGC 2 cut(s) 204, 207
BmiI GGNNCC 1 cut(s) 54
BmsI GCATC 3 cut(s) 83, 272, 289
BsaHI GRCGYC 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 56, 109
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bse118I RCCGGY 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 56, 109
BseGI GGATG 4 cut(s) 91, 98, 126, 296
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 312
Bsh1285I CGRYCG 2 cut(s) 144, 316
BsiEI CGRYCG 2 cut(s) 144, 316
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 2 cut(s) 31, 190
BsmFI GGGAC 2 cut(s) 31, 190
Bsp143I GATC 7 cut(s) 52, 102, 141, 163, 209, 225, 313
BspACI CCGC 7 cut(s) 15, 28, 106, 202, 285, 302, 306
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 54
BspMI ACCTGC 2 cut(s) 209, 259
BspPI GGATC 4 cut(s) 47, 60, 97, 220
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 56, 109
BssMI GATC 7 cut(s) 52, 102, 141, 163, 209, 225, 313
BssNI GRCGYC 1 cut(s) 169
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 304, 308
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 4 cut(s) 91, 98, 126, 296
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 7 cut(s) 55, 105, 144, 166, 212, 228, 316
BstMBI GATC 7 cut(s) 52, 102, 141, 163, 209, 225, 313
BstMCI CGRYCG 2 cut(s) 144, 316
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuI GTATCC 1 cut(s) 233
BtsCI GGATG 4 cut(s) 91, 98, 126, 296
BveI ACCTGC 2 cut(s) 209, 259
Cac8I GCNNGC 2 cut(s) 304, 308
CfoI GCGC 1 cut(s) 312
Cfr10I RCCGGY 1 cut(s) 251
CseI GACGC 1 cut(s) 158
CviAII CATG 1 cut(s) 150
CviJI RGCY 3 cut(s) 157, 251, 278
CviKI_1 RGCY 3 cut(s) 157, 251, 278
DdeI CTNAG 1 cut(s) 321
DpnI GATC 7 cut(s) 54, 104, 143, 165, 211, 227, 315
DpnII GATC 7 cut(s) 52, 102, 141, 163, 209, 225, 313
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 153
FaiI YATR 2 cut(s) 136, 151
FaqI GGGAC 2 cut(s) 31, 190
FatI CATG 1 cut(s) 149
FauI CCCGC 4 cut(s) 8, 21, 295, 299
Fnu4HI GCNGC 2 cut(s) 203, 206
FokI GGATG 4 cut(s) 98, 105, 133, 303
Fsp4HI GCNGC 2 cut(s) 203, 206
FspBI CTAG 2 cut(s) 158, 279
GlaI GCGC 1 cut(s) 311
GluI GCNGC 2 cut(s) 203, 206
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 1 cut(s) 153
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HpaII CCGG 1 cut(s) 252
Hpy188I TCNGA 4 cut(s) 52, 57, 141, 230
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 71, 218, 268
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 263
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 1 cut(s) 153
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 7 cut(s) 52, 102, 141, 163, 209, 225, 313
LpnPI CCDG 3 cut(s) 204, 254, 265
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 3 cut(s) 83, 272, 289
MaeI CTAG 2 cut(s) 158, 279
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 75
MalI GATC 7 cut(s) 54, 104, 143, 165, 211, 227, 315
MboI GATC 7 cut(s) 52, 102, 141, 163, 209, 225, 313
MflI RGATCY 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 6 cut(s) 39, 51, 76, 111, 184, 251
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 312
NdeII GATC 7 cut(s) 52, 102, 141, 163, 209, 225, 313
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 204, 207
Ple19I CGATCG 2 cut(s) 144, 316
Psp1406I AACGTT 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 52
PvuI CGATCG 2 cut(s) 144, 316
RseI CAYNNNNRTG 1 cut(s) 84
SatI GCNGC 2 cut(s) 203, 206
Sau3AI GATC 7 cut(s) 52, 102, 141, 163, 209, 225, 313
SetI ASST 5 cut(s) 50, 62, 223, 266, 273
SfaNI GCATC 3 cut(s) 83, 272, 289
SmiMI CAYNNNNRTG 1 cut(s) 84
SsiI CCGC 7 cut(s) 15, 28, 106, 202, 285, 302, 306
SspMI CTAG 2 cut(s) 158, 279
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 1 cut(s) 266
TaqI TCGA 3 cut(s) 33, 224, 297
TaqII GACCGA 1 cut(s) 306
TauI GCSGC 1 cut(s) 205
TseI GCWGC 1 cut(s) 205
XspI CTAG 2 cut(s) 158, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.