Rroxscaffold_1G00058830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019943
Physical Location & Seq
Forward (+)
80787411 .. 80787698
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058830.1

Sequence Viewer

Length: 288 bp
ATGGACGCCGTCGTCGGACGGGATCTATTTCTAAGCAATCAAAGGTCCCTTTATCGGGGTGTTCTTGCTCCGGATCGAGGGTACAAGTATCCGGTGATAGGGGTGTTTGCGGTGGCGGGGGGAGTGATGCTCGGTTCTAGTAGGACGATGGCGCGAGCCCGGTTGGGTTGTGGAGGTCGGATTCGAGGTGGCCCTTTGCGGTGGTTGCACGAGGATGGTGGATGCGAGTTGCTCCGCTTTGTTTCGGGGATGGGAGTATTTCCGGATCCGATCGAGCATGGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.18

Weight (kDa)

9.68

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019943)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0055841
rosa_multiflora Rmu_sc0012347.1_g000001 Rmu_sc0013558.1_g000002
rosa_roxburghii Rroxscaffold_1G00047060 Rroxscaffold_1G00058830 Rroxscaffold_1G00074050
rosa_rugosa Rorug07G0177100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccII CGCG 1 cut(s) 154
AccIII TCCGGA 2 cut(s) 70, 262
AciI CCGC 4 cut(s) 110, 116, 199, 235
AclWI GGATC 4 cut(s) 30, 81, 260, 273
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 4 cut(s) 54, 55, 77, 98
AlwI GGATC 4 cut(s) 30, 81, 260, 273
Aor13HI TCCGGA 2 cut(s) 70, 262
AoxI GGCC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 45, 191
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 45
BamHI GGATCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 160
BauI CACGAG 1 cut(s) 209
BccI CCATC 3 cut(s) 142, 209, 244
BciVI GTATCC 1 cut(s) 99
BcnI CCSGG 1 cut(s) 160
BfaI CTAG 2 cut(s) 138, 286
BfuI GTATCC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 2 cut(s) 45, 191
BmiI GGNNCC 2 cut(s) 47, 267
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 117, 212
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 6
BsaWI WCCGGW 3 cut(s) 70, 91, 262
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 55, 77, 98
BseAI TCCGGA 2 cut(s) 70, 262
BseGI GGATG 3 cut(s) 220, 227, 255
BseLI CCNNNNNNNGG 4 cut(s) 54, 55, 77, 98
Bsh1236I CGCG 1 cut(s) 154
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 273
BsiSI CCGG 4 cut(s) 71, 92, 160, 263
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 4 cut(s) 54, 55, 77, 98
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 2 cut(s) 70, 262
Bsp143I GATC 4 cut(s) 22, 73, 265, 270
BspACI CCGC 4 cut(s) 110, 116, 199, 235
BspANI GGCC 1 cut(s) 192
BspEI TCCGGA 2 cut(s) 70, 262
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 47, 267
BspPI GGATC 4 cut(s) 30, 81, 260, 273
BssMI GATC 4 cut(s) 22, 73, 265, 270
BssNI GRCGYC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 3 cut(s) 220, 227, 255
BstFNI CGCG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 4 cut(s) 25, 76, 268, 273
BstMBI GATC 4 cut(s) 22, 73, 265, 270
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 158
BstUI CGCG 1 cut(s) 154
BstX2I RGATCY 2 cut(s) 22, 265
BstYI RGATCY 2 cut(s) 22, 265
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 3 cut(s) 220, 227, 255
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 45, 191
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 278
CviJI RGCY 3 cut(s) 158, 192, 285
CviKI_1 RGCY 3 cut(s) 158, 192, 285
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 32
DpnI GATC 4 cut(s) 24, 75, 267, 272
DpnII GATC 4 cut(s) 22, 73, 265, 270
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 1 cut(s) 281
FaiI YATR 1 cut(s) 279
FaqI GGGAC 1 cut(s) 31
FatI CATG 1 cut(s) 277
FauI CCCGC 1 cut(s) 109
FokI GGATG 3 cut(s) 227, 234, 262
FriOI GRGCYC 1 cut(s) 160
FspBI CTAG 2 cut(s) 138, 286
GlaI GCGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 192
HapII CCGG 4 cut(s) 71, 92, 160, 263
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 1 cut(s) 181
HpaII CCGG 4 cut(s) 71, 92, 160, 263
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 17, 180, 270
Hpy188III TCNNGA 2 cut(s) 71, 263
Hpy99I CGWCG 2 cut(s) 14, 17
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 1 cut(s) 152
Kpn2I TCCGGA 2 cut(s) 70, 262
Kzo9I GATC 4 cut(s) 22, 73, 265, 270
LmnI GCTCC 2 cut(s) 73, 237
LpnPI CCDG 4 cut(s) 84, 105, 173, 276
LweI GCATC 2 cut(s) 117, 212
MaeI CTAG 2 cut(s) 138, 286
MalI GATC 4 cut(s) 24, 75, 267, 272
MboI GATC 4 cut(s) 22, 73, 265, 270
MflI RGATCY 2 cut(s) 22, 265
MhlI GDGCHC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 4 cut(s) 71, 167, 179, 205
MroI TCCGGA 2 cut(s) 70, 262
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 4 cut(s) 71, 92, 160, 263
MspR9I CCNGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 160
NdeII GATC 4 cut(s) 22, 73, 265, 270
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 47, 267
PfeI GAWTC 1 cut(s) 181
PflFI GACNNNGTC 1 cut(s) 8
Ple19I CGATCG 1 cut(s) 273
PpuMI RGGWCCY 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 47, 267
PspPI GGNCC 2 cut(s) 45, 191
PspPPI RGGWCCY 1 cut(s) 45
PsuI RGATCY 2 cut(s) 22, 265
PsyI GACNNNGTC 1 cut(s) 8
PvuI CGATCG 1 cut(s) 273
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 213
Sau3AI GATC 4 cut(s) 22, 73, 265, 270
Sau96I GGNCC 2 cut(s) 45, 191
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 1 cut(s) 160
SetI ASST 3 cut(s) 47, 178, 190
SfaNI GCATC 2 cut(s) 117, 212
SinI GGWCC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 213
SsiI CCGC 4 cut(s) 110, 116, 199, 235
SspMI CTAG 2 cut(s) 138, 286
StyD4I CCNGG 1 cut(s) 158
TaqI TCGA 3 cut(s) 76, 184, 273
TfiI GAWTC 1 cut(s) 181
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 45
XspI CTAG 2 cut(s) 138, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.