Rroxscaffold_1G00074050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019943
Physical Location & Seq
Forward (+)
94967228 .. 94972301
5074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074050.1

Sequence Viewer

Length: 642 bp
ATGTTTCTAAGCAATCAAAGGTCCCTTTATCGGGGTGTTCTCGCTTCGGATCGAGGGTACCGTATTTGGTGGCAGGGTGTTCGCGGTGGCGAGAGGGGTGATGCTCAATTATGGCAAGATGATGGGGCGGCCGGTTTGGTTGTGGAGATTGGATTCGAGGTGGCGATTTGCAGGTGGTTGCACGAGGATGAGTGGCATGATGTAGTTCCACTAAAGAAGTCTTCAGGAATTGTCATTAGGGAGCTGGAATGGACCAGTGTTGTGCCTACTCAAGCTAGTGCAACTCAAGCGAATGCACCTGATGACAAAGGCAAGCAAAAAATTATGGAGGAAGAACCTGATGTAATTGTCTTTGATGGCCTAGACAGTCTTGTGGATCCCGTGAAACCTGTTAAGCTAACGGGTTCTTACCGGTCGGCCCGTTATGAACCCGCACGGTACCCGCACGTTGCCGTGCCTAATGAAGAGCAAGAAGCAAATTATGAAAGCGACGTTGAAGACTTATTGTATGCGAACAGTTCAAAGGATGAGGACTATGTTCCCGGGTTTGACAATGAAGATTATGATGAATATGGTTTGGATGATGATTGGTTAGGTGACATGGATGTTGAGTTTAATGAAGTTGGTCAGTGGATAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.17

Weight (kDa)

4.22

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019943)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0055841
rosa_multiflora Rmu_sc0012347.1_g000001 Rmu_sc0013558.1_g000002
rosa_roxburghii Rroxscaffold_1G00047060 Rroxscaffold_1G00058830 Rroxscaffold_1G00074050
rosa_rugosa Rorug07G0177100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 162
Acc36I ACCTGC 1 cut(s) 162
Acc65I GGTACC 2 cut(s) 57, 438
AccB1I GGYRCC 2 cut(s) 57, 438
AccII CGCG 1 cut(s) 84
AciI CCGC 4 cut(s) 84, 128, 432, 443
AclWI GGATC 3 cut(s) 57, 371, 384
AcoI YGGCCR 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 2 cut(s) 59, 440
AfiI CCNNNNNNNGG 2 cut(s) 30, 31
AgeI ACCGGT 1 cut(s) 411
AgsI TTSAA 2 cut(s) 497, 522
AluBI AGCT 3 cut(s) 244, 275, 397
AluI AGCT 3 cut(s) 244, 275, 397
AlwI GGATC 3 cut(s) 57, 371, 384
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 3 cut(s) 129, 358, 417
AsiGI ACCGGT 1 cut(s) 411
Asp718I GGTACC 2 cut(s) 57, 438
AspS9I GGNCC 3 cut(s) 21, 252, 418
AsuC2I CCSGG 2 cut(s) 543, 544
AsuHPI GGTGA 2 cut(s) 110, 608
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 2 cut(s) 21, 252
BamHI GGATCC 1 cut(s) 376
BanI GGYRCC 2 cut(s) 57, 438
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 213, 504
BccI CCATC 2 cut(s) 116, 350
BceAI ACGGC 1 cut(s) 437
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BcnI CCSGG 2 cut(s) 543, 544
BfaI CTAG 2 cut(s) 276, 362
BfuAI ACCTGC 1 cut(s) 162
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 543, 544
Bme18I GGWCC 2 cut(s) 21, 252
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 3 cut(s) 21, 252, 418
BmiI GGNNCC 4 cut(s) 23, 59, 378, 440
BmrFI CCNGG 2 cut(s) 543, 544
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 2 cut(s) 213, 504
BpuEI CTTGAG 2 cut(s) 255, 270
BpuMI CCSGG 2 cut(s) 543, 544
BsaJI CCNNGG 1 cut(s) 542
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 31
Bse118I RCCGGY 2 cut(s) 131, 411
Bse1I ACTGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 4 cut(s) 193, 532, 586, 610
BseLI CCNNNNNNNGG 2 cut(s) 30, 31
BseNI ACTGG 1 cut(s) 255
BseX3I CGGCCG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 2 cut(s) 132, 416
BshFI GGCC 3 cut(s) 131, 360, 419
BshNI GGYRCC 2 cut(s) 57, 438
BshTI ACCGGT 1 cut(s) 411
BsiEI CGRYCG 2 cut(s) 132, 416
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 3 cut(s) 132, 412, 543
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 30, 31
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 3 cut(s) 131, 360, 419
BsoBI CYCGRG 1 cut(s) 542
Bsp143I GATC 2 cut(s) 49, 376
BspACI CCGC 4 cut(s) 84, 128, 432, 443
BspANI GGCC 3 cut(s) 131, 360, 419
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 4 cut(s) 23, 59, 378, 440
BspMI ACCTGC 1 cut(s) 162
BspPI GGATC 3 cut(s) 57, 371, 384
BspQI GCTCTTC 1 cut(s) 459
BspT107I GGYRCC 2 cut(s) 57, 438
BsrFI RCCGGY 2 cut(s) 131, 411
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 2 cut(s) 131, 411
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 2 cut(s) 49, 376
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 4 cut(s) 62, 368, 438, 518
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 4 cut(s) 193, 532, 586, 610
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 2 cut(s) 52, 379
BstMBI GATC 2 cut(s) 49, 376
BstMCI CGRYCG 2 cut(s) 132, 416
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 541, 542
BstUI CGCG 1 cut(s) 84
BstV2I GAAGAC 2 cut(s) 213, 504
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 3 cut(s) 131, 360, 419
BtsCI GGATG 4 cut(s) 193, 532, 586, 610
BtsIMutI CAGTG 2 cut(s) 262, 635
BveI ACCTGC 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 314
Cfr10I RCCGGY 2 cut(s) 131, 411
Cfr13I GGNCC 3 cut(s) 21, 252, 418
Cfr9I CCCGGG 1 cut(s) 542
Csp6I GTAC 2 cut(s) 58, 439
CspAI ACCGGT 1 cut(s) 411
CviAII CATG 2 cut(s) 197, 601
CviJI RGCY 6 cut(s) 131, 244, 275, 360, 397, 419
CviKI_1 RGCY 6 cut(s) 131, 244, 275, 360, 397, 419
CviQI GTAC 2 cut(s) 58, 439
DdeI CTNAG 1 cut(s) 8
DpnI GATC 2 cut(s) 51, 378
DpnII GATC 2 cut(s) 49, 376
EaeI YGGCCR 1 cut(s) 129
EagI CGGCCG 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
EclXI CGGCCG 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 21, 252
Eco52I CGGCCG 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 21
FaeI CATG 2 cut(s) 200, 604
FaqI GGGAC 1 cut(s) 7
FatI CATG 2 cut(s) 196, 600
FauI CCCGC 2 cut(s) 439, 450
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 4 cut(s) 200, 539, 593, 617
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 2 cut(s) 276, 362
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 3 cut(s) 131, 360, 419
HapII CCGG 3 cut(s) 132, 412, 543
Hin1II CATG 2 cut(s) 200, 604
HinfI GANTC 1 cut(s) 153
HpaII CCGG 3 cut(s) 132, 412, 543
HphI GGTGA 2 cut(s) 110, 608
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 494
HpyCH4III ACNGT 4 cut(s) 62, 368, 438, 518
HpyCH4IV ACGT 2 cut(s) 447, 492
HpyCH4V TGCA 4 cut(s) 171, 181, 281, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 2 cut(s) 447, 492
Hsp92II CATG 2 cut(s) 200, 604
KpnI GGTACC 2 cut(s) 61, 442
Kzo9I GATC 2 cut(s) 49, 376
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 1 cut(s) 241
LweI GCATC 1 cut(s) 91
MaeI CTAG 2 cut(s) 276, 362
MaeII ACGT 2 cut(s) 447, 492
MaeIII GTNAC 1 cut(s) 596
MalI GATC 2 cut(s) 51, 378
MboI GATC 2 cut(s) 49, 376
MboII GAAGA 5 cut(s) 213, 344, 476, 509, 569
MflI RGATCY 1 cut(s) 376
MluCI AATT 5 cut(s) 107, 228, 321, 345, 478
MnlI CCTC 6 cut(s) 47, 87, 151, 178, 322, 523
MseI TTAA 2 cut(s) 393, 615
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 3 cut(s) 132, 412, 543
MspR9I CCNGG 2 cut(s) 543, 544
Mva1269I GAATGC 1 cut(s) 298
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 2 cut(s) 543, 544
NdeII GATC 2 cut(s) 49, 376
NlaIII CATG 2 cut(s) 200, 604
NlaIV GGNNCC 4 cut(s) 23, 59, 378, 440
NmuCI GTSAC 1 cut(s) 596
PaqCI CACCTGC 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 153
PinAI ACCGGT 1 cut(s) 411
PkrI GCNGC 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 21
PspN4I GGNNCC 4 cut(s) 23, 59, 378, 440
PspPI GGNCC 3 cut(s) 21, 252, 418
PspPPI RGGWCCY 1 cut(s) 21
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 2 cut(s) 59, 440
RsaNI GTAC 2 cut(s) 58, 439
RseI CAYNNNNRTG 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 393, 615
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 49, 376
Sau96I GGNCC 3 cut(s) 21, 252, 418
ScrFI CCNGG 2 cut(s) 543, 544
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 2 cut(s) 21, 252
SmaI CCCGGG 1 cut(s) 544
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 270, 285
SmoI CTYRAG 2 cut(s) 270, 285
Sse9I AATT 5 cut(s) 107, 228, 321, 345, 478
SsiI CCGC 4 cut(s) 84, 128, 432, 443
SspMI CTAG 2 cut(s) 276, 362
StyD4I CCNGG 2 cut(s) 541, 542
TaaI ACNGT 4 cut(s) 62, 368, 438, 518
TaiI ACGT 2 cut(s) 450, 495
TaqI TCGA 2 cut(s) 52, 156
TasI AATT 5 cut(s) 107, 228, 321, 345, 478
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 393, 615
Tru9I TTAA 2 cut(s) 393, 615
TscAI CASTG 2 cut(s) 262, 635
TseFI GTSAC 1 cut(s) 596
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 6 cut(s) 441, 477, 498, 570, 582, 633
TspMI CCCGGG 1 cut(s) 542
TspRI CASTG 2 cut(s) 262, 635
VpaK11BI GGWCC 2 cut(s) 21, 252
XmaI CCCGGG 1 cut(s) 542
XspI CTAG 2 cut(s) 276, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.