Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0019943

Physical Location & Seq

Genomic Coordinates Reverse (-)

14665740 .. 14666180

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0177100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTTATTGCTGTTTTTATTGAGTTTTGATTATGCTGAGCTTGAAATCATTGCTTTGATTCCTCTGGTGGAGTTCTGTGATGTTCATATTATGAATAAGTATGCAGTGAAGCCTGACCCGGAGACCGTGGATATAATCACCACTGCAGCTAGCCAGAAAGAGATTATAGCTTGGCCTCTTGGGCTGCTGCTGCTGCGGCTGCTTCATCTTTGGAAGCAATTCTGTGTGGTCGACTGTGATCGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

9.5

Weight (kDa)

4.88

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019943)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0055841
rosa_multiflora	Rmu_sc0012347.1_g000001 Rmu_sc0013558.1_g000002
rosa_roxburghii	Rroxscaffold_1G00047060 Rroxscaffold_1G00058830 Rroxscaffold_1G00074050
rosa_rugosa	Rorug07G0177100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	3 cut(s)	40, 149, 170
AluI	AGCT	3 cut(s)	40, 149, 170
Alw26I	GTCTC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	6 cut(s)	146, 184, 187, 190, 193, 199
Asp700I	GAANNNNTTC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	130
AsuNHI	GCTAGC	1 cut(s)	149
BbvI	GCAGC	6 cut(s)	158, 171, 174, 177, 180, 186
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	181
BisI	GCNGC	7 cut(s)	147, 185, 188, 191, 194, 197, 200
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	7 cut(s)	148, 186, 189, 192, 195, 198, 201
Bme1390I	CCNGG	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	119
BmtI	GCTAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	6 cut(s)	158, 171, 174, 177, 180, 186
BshFI	GGCC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	238
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	148
BspOI	GCTAGC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	127, 236
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	5 cut(s)	181, 190, 193, 196, 199
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	6 cut(s)	158, 171, 174, 177, 180, 186
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	126
BtsI	GCAGTG	2 cut(s)	111, 141
BtsIMutI	CAGTG	2 cut(s)	111, 141
Cac8I	GCNNGC	1 cut(s)	151
CviJI	RGCY	8 cut(s)	40, 112, 149, 153, 170, 175, 184, 199
CviKI_1	RGCY	8 cut(s)	40, 112, 149, 153, 170, 175, 184, 199
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	116
FaiI	YATR	6 cut(s)	33, 87, 92, 102, 134, 167
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	7 cut(s)	147, 185, 188, 191, 194, 197, 200
Fsp4HI	GCNGC	7 cut(s)	147, 185, 188, 191, 194, 197, 200
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	7 cut(s)	147, 185, 188, 191, 194, 197, 200
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	232
HpyCH4III	ACNGT	2 cut(s)	127, 236
HpyCH4V	TGCA	2 cut(s)	104, 146
HpyF10VI	GCNNNNNNNGC	5 cut(s)	181, 190, 193, 196, 199
HpyF3I	CTNAG	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	4 cut(s)	50, 126, 132, 167
Lsp1109I	GCAGC	6 cut(s)	158, 171, 174, 177, 180, 186
MaeI	CTAG	1 cut(s)	150
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MluCI	AATT	1 cut(s)	218
MnlI	CCTC	2 cut(s)	72, 186
MroXI	GAANNNNTTC	1 cut(s)	218
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	5 cut(s)	181, 190, 193, 196, 199
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	238
NheI	GCTAGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	7 cut(s)	148, 186, 189, 192, 195, 198, 201
PstI	CTGCAG	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	230
SatI	GCNGC	7 cut(s)	147, 185, 188, 191, 194, 197, 200
Sau3AI	GATC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	3 cut(s)	42, 151, 172
SfcI	CTRYAG	1 cut(s)	144
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	127, 236
TaqI	TCGA	2 cut(s)	231, 241
TasI	AATT	1 cut(s)	218
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	58
TscAI	CASTG	2 cut(s)	111, 148
TseI	GCWGC	6 cut(s)	146, 184, 187, 190, 193, 199
TspDTI	ATGAA	3 cut(s)	74, 107, 194
TspRI	CASTG	2 cut(s)	111, 148
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.