RchiOBHm_Chr5g0057291

Macrophage erythroblast

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
61201864 .. 61203427
1564 bp
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UTR
Exon/CDS
Intron
PRQ33407

Sequence Viewer

Length: 393 bp
ATGTCTCAGGATCTTGCTCATAGCGATGTATTTCAAGAAACCAGAAAGGTTATTGAAGCTTTCCAGAATAAGGAGGTAGGCCCTGCCCTATCCTGGTGTGCCGAGAACAAGTCAAGGTTAAAGAAATCCAAAGTATGCATTCTCTTTTTCTTTTGTGTACGTTGGTGGGGAGACCTTGCTATAATTGGGGTGGTTTTATTTGAACCAAAACAATGGGATTACCCGGTTGACCAATTCAAACAAGAATTCTGCAAGTTGTATGGCATAACGTTTGAGCCTCTGTTGAATATTTATCTGCAAGCAGGACTCTCTGCTCTGAAAACCCGGTATCTGTTTACTGATATTTATCTGATTTCTATATTGTTGTCCTCATATACATTTAATCTTCTCTAG

Protein Analysis

130

Amino Acids

15.2

Weight (kDa)

7.62

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 10 - 51 3e-06 CTLH/CRA C-terminal to LisH motif domain
CTLH PF10607 66 - 109 9.5e-10 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018579)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 269
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 2 cut(s) 70, 93
AgsI TTSAA 5 cut(s) 35, 56, 203, 238, 286
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 9, 165
AlwI GGATC 1 cut(s) 18
AoxI GGCC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 2 cut(s) 224, 325
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 2 cut(s) 224, 325
BcoDI GTCTC 2 cut(s) 9, 165
BfaI CTAG 1 cut(s) 391
Bme1390I CCNGG 3 cut(s) 94, 224, 325
BmgT120I GGNCC 1 cut(s) 80
BmrFI CCNGG 3 cut(s) 94, 224, 325
BpuMI CCSGG 2 cut(s) 224, 325
BsaBI GATNNNNATC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 93
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 70, 93
BseMII CTCAG 1 cut(s) 20
BshFI GGCC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 224, 325
BslI CCNNNNNNNGG 2 cut(s) 70, 93
BsmAI GTCTC 2 cut(s) 9, 165
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 10
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 165
BssMI GATC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 6
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 2 cut(s) 9, 165
BstMBI GATC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 92, 222, 323
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 158
CviJI RGCY 3 cut(s) 59, 81, 277
CviKI_1 RGCY 3 cut(s) 59, 81, 277
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 140
FaiI YATR 8 cut(s) 21, 136, 182, 261, 266, 359, 373, 375
FspBI CTAG 1 cut(s) 391
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 224, 325
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 1 cut(s) 306
HpaII CCGG 2 cut(s) 224, 325
Hpy166II GTNNAC 3 cut(s) 158, 229, 336
Hpy188I TCNGA 2 cut(s) 318, 351
Hpy188III TCNNGA 3 cut(s) 8, 35, 64
Hpy8I GTNNAC 3 cut(s) 158, 229, 336
HpyCH4IV ACGT 2 cut(s) 160, 269
HpyCH4V TGCA 3 cut(s) 138, 252, 298
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 2 cut(s) 160, 269
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 55, 77, 79, 96, 106, 237, 288, 338
MaeI CTAG 1 cut(s) 391
MaeII ACGT 2 cut(s) 160, 269
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 377
MflI RGATCY 1 cut(s) 10
MluCI AATT 3 cut(s) 183, 233, 245
MlyI GAGTC 1 cut(s) 300
MnlI CCTC 3 cut(s) 67, 288, 379
Mph1103I ATGCAT 1 cut(s) 140
MseI TTAA 2 cut(s) 119, 381
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 2 cut(s) 224, 325
MspR9I CCNGG 3 cut(s) 94, 224, 325
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 1 cut(s) 94
NciI CCSGG 2 cut(s) 224, 325
NdeII GATC 1 cut(s) 10
NmeAIII GCCGAG 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 140
PctI GAATGC 1 cut(s) 138
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspPI GGNCC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 2 cut(s) 119, 381
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 3 cut(s) 94, 224, 325
SetI ASST 7 cut(s) 51, 61, 78, 119, 163, 177, 272
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 3 cut(s) 183, 233, 245
SspI AATATT 1 cut(s) 289
SspMI CTAG 1 cut(s) 391
StyD4I CCNGG 3 cut(s) 92, 222, 323
TaiI ACGT 2 cut(s) 163, 272
TasI AATT 3 cut(s) 183, 233, 245
Tru1I TTAA 2 cut(s) 119, 381
Tru9I TTAA 2 cut(s) 119, 381
XapI RAATTY 1 cut(s) 245
XspI CTAG 1 cut(s) 391
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.