Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0018579

Physical Location & Seq

Genomic Coordinates Forward (+)

63067684 .. 63070261

Gene Structure 2578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG444400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGGATCTCTCTGAGCTAGAGATTAGGAATTTCGTCAAGTCCTTCCACAAGTTCGTCGACTTGAAGAGGGAGCTCTTCCATAGCCATATTGATGAGCTCCAGAAAATCATCGTCAATCAATGTAAACTCATCGGCACCAATCCTCTCTCGCAAGAGATGGATCTTGCTGATATCAATGTATTTCAAGAAACCAGAAAGGTTATTGAAGCTTTCCAGAATAAGGAGGTAGGCCCTGCCCTAGCCTGGTGTGCCGAGAACAAGTCAAGGTTAAAGAAATCCAAAGTTTTATTTGAACCAAAACAATGGGATTACCCGGTTGACCAATTCAAACAGGAATTCTGCAAGTTGTATGGCATAACGTTTGAGCCACTGTTGAATATTTATCTGCAAGCAGGACTCTCTGCTCTGAAAACCCCGTATCTATTTACTGATATTTATCTGATTTCTATATTGTTGTCCTCATATACATTTAATCTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

161

Amino Acids

18.87

Weight (kDa)

5.94

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	96 - 141	3.8e-10	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018579)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170231 RchiOBHm_Chr5g0057291
rosa_multiflora	Rmu_sc0000854.1_g000041 Rmu_sc0000857.1_g000007
rosa_roxburghii	Rroxscaffold_2G00112110
rosa_samantha	Rh2CG599900 Rh4DG167400 Rh7AG420400 Rh7DG444400
rosa_wichuraiana	Rw0G021080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	60
AclI	AACGTT	1 cut(s)	362
AclWI	GGATC	2 cut(s)	15, 171
AcsI	RAATTY	2 cut(s)	31, 338
AfiI	CCNNNNNNNGG	2 cut(s)	223, 246
AgsI	TTSAA	6 cut(s)	67, 188, 209, 296, 331, 379
AjnI	CCWGG	1 cut(s)	245
AluBI	AGCT	4 cut(s)	19, 76, 100, 212
AluI	AGCT	4 cut(s)	19, 76, 100, 212
Alw21I	GWGCWC	2 cut(s)	78, 102
AlwI	GGATC	2 cut(s)	15, 171
AoxI	GGCC	1 cut(s)	232
ApoI	RAATTY	2 cut(s)	31, 338
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	78, 102
Bbv12I	GWGCWC	2 cut(s)	78, 102
BccI	CCATC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	317
BfaI	CTAG	3 cut(s)	20, 242, 484
Bme1390I	CCNGG	2 cut(s)	247, 317
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	247, 317
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 246
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	223, 246
BseMII	CTCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	2 cut(s)	78, 102
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	223, 246
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	78, 102
Bsp143I	GATC	2 cut(s)	7, 163
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	15, 171
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	137
BssMI	GATC	2 cut(s)	7, 163
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	375
Bst6I	CTCTTC	2 cut(s)	62, 83
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	15
BstKTI	GATC	2 cut(s)	10, 166
BstMBI	GATC	2 cut(s)	7, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	245, 315
BstX2I	RGATCY	2 cut(s)	7, 163
BstXI	CCANNNNNNTGG	1 cut(s)	306
BstYI	RGATCY	2 cut(s)	7, 163
BsuRI	GGCC	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	233
CviJI	RGCY	8 cut(s)	19, 76, 87, 100, 212, 234, 245, 370
CviKI_1	RGCY	8 cut(s)	19, 76, 87, 100, 212, 234, 245, 370
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	9, 165
DpnII	GATC	2 cut(s)	7, 163
Eam1104I	CTCTTC	2 cut(s)	62, 83
EarI	CTCTTC	2 cut(s)	62, 83
Ecl136II	GAGCTC	2 cut(s)	76, 100
Eco24I	GRGCYC	2 cut(s)	78, 102
Eco32I	GATATC	1 cut(s)	175
Eco53kI	GAGCTC	2 cut(s)	76, 100
EcoICRI	GAGCTC	2 cut(s)	76, 100
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	245
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	2 cut(s)	78, 102
FaiI	YATR	7 cut(s)	84, 90, 354, 359, 452, 466, 468
FblI	GTMKAC	1 cut(s)	60
FriOI	GRGCYC	2 cut(s)	78, 102
FspBI	CTAG	3 cut(s)	20, 242, 484
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	317
HincII	GTYRAC	2 cut(s)	61, 322
HindII	GTYRAC	2 cut(s)	61, 322
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	317
Hpy166II	GTNNAC	3 cut(s)	61, 128, 322
Hpy188I	TCNGA	3 cut(s)	16, 411, 444
Hpy188III	TCNNGA	3 cut(s)	103, 188, 217
Hpy8I	GTNNAC	3 cut(s)	61, 128, 322
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	2 cut(s)	345, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	362
Kzo9I	GATC	2 cut(s)	7, 163
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	73, 105
LpnPI	CCDG	9 cut(s)	116, 208, 230, 232, 249, 259, 320, 330, 381
MaeI	CTAG	3 cut(s)	20, 242, 484
MaeII	ACGT	1 cut(s)	362
MalI	GATC	2 cut(s)	9, 165
MboI	GATC	2 cut(s)	7, 163
MboII	GAAGA	3 cut(s)	70, 79, 470
MflI	RGATCY	2 cut(s)	7, 163
MhlI	GDGCHC	2 cut(s)	78, 102
MluCI	AATT	3 cut(s)	31, 326, 338
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	63, 156, 220, 472
MseI	TTAA	2 cut(s)	272, 474
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	247, 317
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	7, 163
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
Psp124BI	GAGCTC	2 cut(s)	78, 102
Psp1406I	AACGTT	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	7, 163
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	2 cut(s)	78, 102
SalI	GTCGAC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	272, 474
Sau3AI	GATC	2 cut(s)	7, 163
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	2 cut(s)	247, 317
SduI	GDGCHC	2 cut(s)	78, 102
SetI	ASST	8 cut(s)	21, 78, 102, 204, 214, 231, 272, 365
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	3 cut(s)	31, 326, 338
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	3 cut(s)	20, 242, 484
SstI	GAGCTC	2 cut(s)	78, 102
StyD4I	CCNGG	2 cut(s)	245, 315
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	1 cut(s)	60
TasI	AATT	3 cut(s)	31, 326, 338
Tru1I	TTAA	2 cut(s)	272, 474
Tru9I	TTAA	2 cut(s)	272, 474
TscAI	CASTG	1 cut(s)	378
TspRI	CASTG	1 cut(s)	378
XapI	RAATTY	2 cut(s)	31, 338
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	3 cut(s)	20, 242, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.