Rh7AG420400

CTLH/CRA C-terminal to LisH motif domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018579
Physical Location & Seq
Forward (+)
56512098 .. 56550555
38458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG420400.1

Sequence Viewer

Length: 390 bp
ATGGAGGATCTCTCTGAGCTAGAGATTAGGAATTTCGTCAAGTCCTTCCACAAGTTCGTCGACTTGAAGAGGGAGCTCTTCCATACCCATATTGATGAGCTCCGGAAAATCATCGTCAATCAATGTTGTAAACTCACCGGCACCAATCCTCTCTCGCAAGAGATGGATCTTGCTGATATCGATGTATTTCAAGAAACCAGAAAGGTTATTGAAGCTTTCCAGAATAAGGAGGTTTTATTTGAACCAAAACAATGGGATTACCCGGTTGACCAATTCAAACAGGAATTCTGCAAGTTGTATGGCATAACGTTTGAGCCTCTGTTGAATATTTATCTGCAAGCAGGACTCTCTGCTCTGAAAACCCCCAGAGTAATTGCAATTATATCATGA

Protein Analysis

129

Amino Acids

15.19

Weight (kDa)

5.38

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 48 - 122 4.3e-11 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018579)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0170231 RchiOBHm_Chr5g0057291
rosa_multiflora Rmu_sc0000854.1_g000041 Rmu_sc0000857.1_g000007
rosa_roxburghii Rroxscaffold_2G00112110
rosa_samantha Rh2CG599900 Rh4DG167400 Rh7AG420400 Rh7DG444400
rosa_wichuraiana Rw0G021080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 60
AccIII TCCGGA 1 cut(s) 102
AclI AACGTT 1 cut(s) 308
AclWI GGATC 2 cut(s) 15, 174
AcsI RAATTY 2 cut(s) 31, 284
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 6 cut(s) 67, 191, 212, 242, 277, 325
AluBI AGCT 4 cut(s) 19, 76, 100, 215
AluI AGCT 4 cut(s) 19, 76, 100, 215
Alw21I GWGCWC 2 cut(s) 78, 102
AlwI GGATC 2 cut(s) 15, 174
Aor13HI TCCGGA 1 cut(s) 102
ApoI RAATTY 2 cut(s) 31, 284
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 127
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 2 cut(s) 78, 102
Bbv12I GWGCWC 2 cut(s) 78, 102
BccI CCATC 1 cut(s) 157
BcnI CCSGG 1 cut(s) 263
BfaI CTAG 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 263
BplI GAGNNNNNCTC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 137
BseAI TCCGGA 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 78, 102
BsiSI CCGG 3 cut(s) 103, 138, 263
BslI CCNNNNNNNGG 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 78, 102
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 2 cut(s) 7, 166
BspCNI CTCAG 1 cut(s) 7
BspDI ATCGAT 1 cut(s) 180
BspEI TCCGGA 1 cut(s) 102
BspHI TCATGA 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 2 cut(s) 15, 174
BspQI GCTCTTC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 2 cut(s) 7, 166
Bst6I CTCTTC 2 cut(s) 62, 83
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 15
BstKTI GATC 2 cut(s) 10, 169
BstMBI GATC 2 cut(s) 7, 166
BstSCI CCNGG 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 7, 166
BstXI CCANNNNNNTGG 1 cut(s) 252
BstYI RGATCY 2 cut(s) 7, 166
Bsu15I ATCGAT 1 cut(s) 180
BsuTUI ATCGAT 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 180
CviAII CATG 1 cut(s) 387
CviJI RGCY 5 cut(s) 19, 76, 100, 215, 316
CviKI_1 RGCY 5 cut(s) 19, 76, 100, 215, 316
DdeI CTNAG 1 cut(s) 15
DpnI GATC 2 cut(s) 9, 168
DpnII GATC 2 cut(s) 7, 166
Eam1104I CTCTTC 2 cut(s) 62, 83
EarI CTCTTC 2 cut(s) 62, 83
Ecl136II GAGCTC 2 cut(s) 76, 100
Eco24I GRGCYC 2 cut(s) 78, 102
Eco32I GATATC 1 cut(s) 178
Eco53kI GAGCTC 2 cut(s) 76, 100
EcoICRI GAGCTC 2 cut(s) 76, 100
EcoRI GAATTC 1 cut(s) 284
EcoRV GATATC 1 cut(s) 178
EcoT38I GRGCYC 2 cut(s) 78, 102
FaeI CATG 1 cut(s) 390
FaiI YATR 6 cut(s) 84, 90, 300, 305, 383, 388
FatI CATG 1 cut(s) 386
FblI GTMKAC 1 cut(s) 60
FriOI GRGCYC 2 cut(s) 78, 102
FspBI CTAG 1 cut(s) 20
HapII CCGG 3 cut(s) 103, 138, 263
Hin1II CATG 1 cut(s) 390
HincII GTYRAC 2 cut(s) 61, 268
HindII GTYRAC 2 cut(s) 61, 268
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 1 cut(s) 345
HpaII CCGG 3 cut(s) 103, 138, 263
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 3 cut(s) 61, 131, 268
Hpy188I TCNGA 2 cut(s) 16, 357
Hpy188III TCNNGA 4 cut(s) 103, 191, 220, 387
Hpy8I GTNNAC 3 cut(s) 61, 131, 268
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 291, 337, 377
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 1 cut(s) 390
Kpn2I TCCGGA 1 cut(s) 102
Kzo9I GATC 2 cut(s) 7, 166
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 73, 105
LpnPI CCDG 8 cut(s) 116, 151, 211, 233, 266, 276, 327, 379
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 308
MalI GATC 2 cut(s) 9, 168
MboI GATC 2 cut(s) 7, 166
MboII GAAGA 2 cut(s) 70, 79
MflI RGATCY 2 cut(s) 7, 166
MhlI GDGCHC 2 cut(s) 78, 102
MluCI AATT 5 cut(s) 31, 272, 284, 372, 378
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 4 cut(s) 63, 159, 223, 327
MroI TCCGGA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 93
MspI CCGG 3 cut(s) 103, 138, 263
MspR9I CCNGG 1 cut(s) 263
NciI CCSGG 1 cut(s) 263
NdeII GATC 2 cut(s) 7, 166
NlaIII CATG 1 cut(s) 390
NlaIV GGNNCC 1 cut(s) 142
PagI TCATGA 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 83
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
Psp124BI GAGCTC 2 cut(s) 78, 102
Psp1406I AACGTT 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 142
PsuI RGATCY 2 cut(s) 7, 166
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 2 cut(s) 78, 102
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 7, 166
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 2 cut(s) 78, 102
SetI ASST 7 cut(s) 21, 78, 102, 207, 217, 234, 311
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 5 cut(s) 31, 272, 284, 372, 378
SspI AATATT 1 cut(s) 328
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 2 cut(s) 78, 102
StyD4I CCNGG 1 cut(s) 261
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 60, 180
TasI AATT 5 cut(s) 31, 272, 284, 372, 378
XapI RAATTY 2 cut(s) 31, 284
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.