Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0018579

Physical Location & Seq

Genomic Coordinates Reverse (-)

33349046 .. 33353566

Gene Structure 4521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGAGGATCTCTCTGAGCTAAAGATTGGGAATTCCGTCGAGTCCTTCTATAAGTTCGTCGACTCGCAGAGGGAGTTCTTCCATAGCCAGATGGATGAGCTCCTGAAAATCGTCGTCACCCAATGCAAACTCACCAATGCCGAACCTCTCTCGCGCACAAGAGATGGCACTGCAATTGAGCATTGTCGCAAACATATATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

67

Amino Acids

7.79

Weight (kDa)

5.85

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018579)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170231 RchiOBHm_Chr5g0057291
rosa_multiflora	Rmu_sc0000854.1_g000041 Rmu_sc0000857.1_g000007
rosa_roxburghii	Rroxscaffold_2G00112110
rosa_samantha	Rh2CG599900 Rh4DG167400 Rh7AG420400 Rh7DG444400
rosa_wichuraiana	Rw0G021080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	154
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	31
AluBI	AGCT	2 cut(s)	19, 100
AluI	AGCT	2 cut(s)	19, 100
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	109, 124
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BccI	CCATC	2 cut(s)	85, 158
BplI	GAGNNNNNCTC	1 cut(s)	28
BseGI	GGATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	15
BssMI	GATC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstUI	CGCG	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
CfoI	GCGC	1 cut(s)	156
CviJI	RGCY	3 cut(s)	19, 87, 100
CviKI_1	RGCY	3 cut(s)	19, 87, 100
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	102
FaiI	YATR	5 cut(s)	51, 84, 195, 197, 202
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	102
GlaI	GCGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	41, 62
HphI	GGTGA	2 cut(s)	109, 124
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	3 cut(s)	41, 62, 116
HpyAV	CCTTC	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	126, 173
HpyF3I	CTNAG	1 cut(s)	15
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	2 cut(s)	101, 116
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	70
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	31, 174
MlyI	GAGTC	2 cut(s)	50, 56
MnlI	CCTC	2 cut(s)	63, 156
MunI	CAATTG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	154
NdeII	GATC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	115
PleI	GAGTC	2 cut(s)	49, 56
PpsI	GAGTC	2 cut(s)	49, 56
Psp124BI	GAGCTC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	102
SalI	GTCGAC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	7
SchI	GAGTC	2 cut(s)	50, 56
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	3 cut(s)	21, 102, 148
SgeI	CNNG	7 cut(s)	52, 76, 100, 115, 163, 165, 171
Sse9I	AATT	2 cut(s)	31, 174
SstI	GAGCTC	1 cut(s)	102
TaqI	TCGA	2 cut(s)	39, 60
TasI	AATT	2 cut(s)	31, 174
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.