Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00970

Orthogroup ID

OG0018579

Physical Location & Seq

Genomic Coordinates Forward (+)

3409 .. 6165

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGCTCCAGAAAATCATCGTCAATCAATGTAAACTCACCGGCACCAATCCTCTCTGGCAAGAGATGGCAGCTGGTGCCTTTTCTATTAATATTGGATCTTGCTGATATCGATGTATTTCAAGAAACTAGAAAGGTTATTGAAGCTTTCCAGAATAAGGAGGTAGGCCCTGCCCTAGCCTGGTGTGCCGAGAACAAGTCAAGGTTAAAGAAATTCAAAGTTTTATTTGAACCAAAACAATGGGTTTACCCGGTTGACCAATTCAAACAGGAATTCTGCAAGTTGTATGGCATAACGTTTGAGCCTCTGTTGAATATTTATCTGTCTCTCTTTCAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

113

Amino Acids

13.14

Weight (kDa)

9.17

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018579)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170231 RchiOBHm_Chr5g0057291
rosa_multiflora	Rmu_sc0000854.1_g000041 Rmu_sc0000857.1_g000007
rosa_roxburghii	Rroxscaffold_2G00112110
rosa_samantha	Rh2CG599900 Rh4DG167400 Rh7AG420400 Rh7DG444400
rosa_wichuraiana	Rw0G021080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 76
AclI	AACGTT	1 cut(s)	296
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	212, 272
AfiI	CCNNNNNNNGG	2 cut(s)	157, 180
AgsI	TTSAA	7 cut(s)	122, 143, 217, 230, 265, 313, 335
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	3 cut(s)	6, 73, 146
AluI	AGCT	3 cut(s)	6, 73, 146
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	2 cut(s)	212, 272
AseI	ATTAAT	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	30
BanI	GGYRCC	2 cut(s)	43, 76
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	2 cut(s)	129, 176
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	2 cut(s)	181, 251
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	45, 78
BmrFI	CCNGG	2 cut(s)	181, 251
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 180
Bse118I	RCCGGY	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	181
BseCI	ATCGAT	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	157, 180
BseXI	GCAGC	1 cut(s)	82
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	2 cut(s)	43, 76
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	41, 251
BslI	CCNNNNNNNGG	2 cut(s)	157, 180
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	168
BspDI	ATCGAT	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	45, 78
BspPI	GGATC	1 cut(s)	105
BspT107I	GGYRCC	2 cut(s)	43, 76
BsrFI	RCCGGY	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	40
BssMI	GATC	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 185
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	179, 249
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	97
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	167
ClaI	ATCGAT	1 cut(s)	111
CviJI	RGCY	6 cut(s)	6, 73, 146, 168, 179, 304
CviKI_1	RGCY	6 cut(s)	6, 73, 146, 168, 179, 304
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	179
EcoRV	GATATC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	8
FaiI	YATR	2 cut(s)	288, 293
Fnu4HI	GCNGC	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	2 cut(s)	129, 176
GluI	GCNGC	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	2 cut(s)	41, 251
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	144
HpaII	CCGG	2 cut(s)	41, 251
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	34, 247, 256
Hpy188III	TCNNGA	3 cut(s)	9, 122, 151
Hpy8I	GTNNAC	3 cut(s)	34, 247, 256
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 185
HpySE526I	ACGT	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	11
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	2 cut(s)	129, 176
MaeII	ACGT	1 cut(s)	296
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	212, 260, 272
MnlI	CCTC	3 cut(s)	62, 154, 315
MseI	TTAA	2 cut(s)	89, 206
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	2 cut(s)	41, 251
MspR9I	CCNGG	2 cut(s)	181, 251
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	76, 185
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	97
NlaIV	GGNNCC	2 cut(s)	45, 78
NmeAIII	GCCGAG	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	45, 78
PspPI	GGNCC	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	89, 206
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	181, 251
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	8, 75, 138, 148, 165, 206, 299
Sse9I	AATT	3 cut(s)	212, 260, 272
SspI	AATATT	2 cut(s)	93, 316
SspMI	CTAG	2 cut(s)	129, 176
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	179, 249
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	111
TasI	AATT	3 cut(s)	212, 260, 272
Tru1I	TTAA	2 cut(s)	89, 206
Tru9I	TTAA	2 cut(s)	89, 206
TseI	GCWGC	1 cut(s)	70
VspI	ATTAAT	1 cut(s)	89
XapI	RAATTY	2 cut(s)	212, 272
XspI	CTAG	2 cut(s)	129, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.